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The Components Tab displays all the chemical species relevant for the currently focused project level. Annotation data for particular components are accessible after clicking on the requested component header.
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Reactions Tab contains information regarding the modeled reactions. After clicking on the particular reaction header, the reacting components and relevant kinetic parameters are displayed.
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Holzwarth_2006
The mechanism and kinetics of electron transfer in isolated D1/D2-cytb559 photosystem (PS) II reaction centers (RCs) and in intact PSII cores have been studied by femtosecond transient absorption and kinetic compartment modeling. For intact PSII, a component of .1.5 ps reflects the dominant energy- ...
Holzwarth AR, Mueller, Reus M, Nowaczyk M, Sander J and Roegner M (2006) Kinetics and mechanism of electron transfer in intact photosystem II and in the isolated reaction center: pheophytin is the primary electron acceptor. Proc Natl Acad Sci U S A 103: 6895-6900
DOI:10.1073/pnas.0505371103
GO:0009523
DOI:10.1007/s11120-007-9178-9
GO:0015979
GO:0009765
chemical entity:chlorophyll a
compound:chlorophyll a
compound:plastoquinone
compound:pheophytin a
cellular component:PSII light-harvesting complex
compound:chlorophyll a
| Reaction | Rate |
|---|---|
| P680 / Core Antenna* / ChlD / Qa / Pheo -> P680 / Core Antenna / ChlD / Qa / Pheo | 2.00e+5 mol/s-1 (Fluorescence: 6.70e+7 mol/sec-1) |
| P680 / Core Antenna* / ChlD / Qa / Pheo | |
| P680 / Core Antenna / ChlD / Qa / Pheo | |
biological process:photosynthesis,light harvesting
| Reaction | Rate |
|---|---|
| P680 / Core Antenna* / ChlD / Qa / Pheo -> P680 / Core Antenna / ChlD* / Qa / Pheo | 1.92e+10 mol/s-1 |
| P680 / Core Antenna* / ChlD / Qa / Pheo | |
| P680 / Core Antenna / ChlD* / Qa / Pheo | |
biological process:photosynthesis,light harvesting
| Reaction | Rate |
|---|---|
| P680 / Core Antenna / ChlD* / Qa / Pheo -> P680 / Core Antenna* / ChlD / Qa / Pheo | 2.50e+10 mol/s-1 |
| P680 / Core Antenna / ChlD* / Qa / Pheo | |
| P680 / Core Antenna* / ChlD / Qa / Pheo | |
| Reaction | Rate |
|---|---|
| P680 / Core Antenna / ChlD* / Qa / Pheo -> P680 / Core Antenna / ChlD / Qa / Pheo | 2.00e+5 mol/s-1 (Fluorescence: 6.70e+6 mol/sec-1) |
| P680 / Core Antenna / ChlD* / Qa / Pheo | |
| P680 / Core Antenna / ChlD / Qa / Pheo | |
| Reaction | Rate |
|---|---|
| P680 / Core Antenna / ChlD+ / Qa / Pheo- -> P680 / Core Antenna / ChlD* / Qa / Pheo | 5.00e+11 mol/s-1 |
| P680 / Core Antenna / ChlD+ / Qa / Pheo- | |
| P680 / Core Antenna / ChlD* / Qa / Pheo | |
| Reaction | Rate |
|---|---|
| P680 / Core Antenna / ChlD+ / Qa / Pheo- -> Core Antenna / P680+ / ChlD / Qa / Pheo- | 2.50e+11 mol/s-1 |
| P680 / Core Antenna / ChlD+ / Qa / Pheo- | |
| Core Antenna / P680+ / ChlD / Qa / Pheo- | |
| Reaction | Rate |
|---|---|
| Core Antenna / P680+ / ChlD / Qa / Pheo- -> Core Antenna / P680+ / ChlD / Qa- / Pheo | 4.80e+9 mol/s-1 |
| Core Antenna / P680+ / ChlD / Qa / Pheo- | |
| Core Antenna / P680+ / ChlD / Qa- / Pheo | |
| Reaction | Rate |
|---|---|
| Core Antenna / P680+ / ChlD / Qa- / Pheo -> Core Antenna / P680+ / ChlD / Qa / Pheo- | 2.40e+9 mol/s-1 |
| Core Antenna / P680+ / ChlD / Qa- / Pheo | |
| Core Antenna / P680+ / ChlD / Qa / Pheo- | |
| Reaction | Rate |
|---|---|
| P680 / Core Antenna / ChlD* / Qa / Pheo -> P680 / Core Antenna / ChlD+ / Qa / Pheo- | 5.00e+11 mol/s-1 |
| P680 / Core Antenna / ChlD* / Qa / Pheo | |
| P680 / Core Antenna / ChlD+ / Qa / Pheo- | |
| Reaction | Rate |
|---|---|
| Core Antenna / P680+ / ChlD / Qa / Pheo- -> P680 / Core Antenna / ChlD+ / Qa / Pheo- | 6.70e+10 mol/s-1 |
| Core Antenna / P680+ / ChlD / Qa / Pheo- | |
| P680 / Core Antenna / ChlD+ / Qa / Pheo- | |

