+ Holzwarth_2006
+ Photosynthetic apparatus
+ Thylakoid membrane
+ Photosystem II
+ 'P680'
o P680
o P680+
+ 'Qa'
o Qa
o Qa-
+ 'PhD1'
o PhD1
o PhD1-
+ Core Antenna
o ac
o ac*
+ 'ChlD1'
o ChlD1
o ChlD1*
o ChlD1+
+ Lazár_2009
+ Photosynthetic apparatus
+ Thylakoid membrane
+ Cytochrome b6/f
+ Low-potential heme b
o bL-
o bL
+ Pair of high-potential heme b and heme c
o bH.c-
o bH.c
o bH.c2-
+ Heme f
o f
o f-
+ Photosystem II
+ 'P680'
o P680+
o P680
+ 'Qa'
o Qa-
o Qa
+ 'Qb'
o Qb
o Qb-
o Qb2-
+ Oxygen Evolving Complex
o S0
o S1
o S2
o S3
+ Photosystem I
+ 'P700'
o P700+
o P700
+ 'Fb'
o Fb
o Fb-
+ PQ Pool
+ Plastoquinon
o PQ
o PQH
+ Chloroplast stroma
+ Ferredoxin
o Fd
o Fd-
+ FNR
o FNRa
o FNRa-
o FNRa2-
o FNRi
+ Thylakiod lumen
+ Plastocyanin
o Pc
o Pc+
+ Laisk_2009
+ Photosynthetic apparatus
+ Chloroplast stroma
o ADPGlu
o ATP
o E4P
o EOP
o EP
o EPG
o EPP
o ER
o FBP
o F6P
o G6P
o G1P
o NADPH
o OP
o Ru5P
o R5P
o Xu5P
o PGA
+ Ferredoxin
o Fd-
o RuBP
o S7P
o SBP
o GAP
o DHAP
o TRf_
o TRm_
+ Thylakoid membrane
o Cytochrome b6/f
+ Photosystem I
+ 'P700'
o P700
+ 'Fb'
o Fb-
+ Thylakiod lumen
+ Plastocyanin
o Pc
o Hlt
+ Enzymes
o ENf_
o ENm_
+ Cytosol
o F26BPc
o FBPc
o F6Pc
o G6Pc
o G1Pc
o OXAc
o P2GAc
o PEPc
o PGAc
o PYRc
o SuPCc
o GAPc
o DHAPc
o UDPGluc

Navigation
This is the root level of the projects ontology view. To browse the projects use the navigation panel on the left. By moving the cursor over the graphical scheme below, models implementing the currently focused modul are emphasized yellow. The root level is returned by clicking on the Projects button in the main menu bar.

By clicking on the project name in the navigation tree on the left, the view is switched to the model view showing a precise model scheme and overview of all model species (state variables). Ontology view is switched back by clicking on any item in the subtree of the selected project or by returning to the root level.

Photosynthetic apparatus