Repository > Laisk_2009

Repository

+ Holzwarth_2006
+ Photosynthetic apparatus
+ Thylakoid membrane
+ Photosystem II
+ 'P680'
o P680
o P680+
+ 'Qa'
o Qa
o Qa-
+ 'PhD1'
o PhD1
o PhD1-
+ Core Antenna
o ac
o ac*
+ 'ChlD1'
o ChlD1
o ChlD1*
o ChlD1+
+ Laisk_2009
+ Ontology
+ Photosynthetic apparatus
+ Chloroplast stroma
o ADPGlu
o ATP
o E4P
o EOP
o EP
o EPG
o EPP
o ER
o F6P
o FBP
o G6P
o G1P
o NADPH
o OP
o Ru5P
o R5P
o Xu5P
o PGA
+ Ferredoxin
o Fd-
o RuBP
o S7P
o SBP
o GAP
o DHAP
o TRf_
o TRm_
+ Thylakoid membrane
o Cytochrome b6/f
+ Photosystem I
+ 'P700'
o P700
+ 'Fb'
o Fb-
+ Thylakiod lumen
+ Plastocyanin
o Pc
o Hlt
+ Cytosol
o DHAPc
o F26BPc
o F6Pc
o FBPc
o G1Pc
o G6Pc
o GAPc
o OXAc
o P2GAc
o PEPc
o PGAc
o PYRc
o SuPCc
o UDPGluc
+ Enzymes
o ENf_
o ENm_
o
+ Lazár_2009
+ Photosynthetic apparatus
+ Thylakoid membrane
+ Cytochrome b6/f
+ Heme f
o f
o f-
+ Pair of high-potential heme b and heme c
o bH.c-
o bH.c
o bH.c2-
+ Low-potential heme b
o bL-
o bL
+ Photosystem II
+ 'Qa'
o Qa-
o Qa
+ 'P680'
o P680+
o P680
+ 'Qb'
o Qb
o Qb-
o Qb2-
+ Oxygen Evolving Complex
o S0
o S1
o S2
o S3
+ Photosystem I
+ 'Fb'
o Fb
o Fb-
+ 'P700'
o P700+
o P700
+ PQ Pool
+ Plastoquinon
o PQ
o PQH
+ Chloroplast stroma
+ Ferredoxin
o Fd
o Fd-
+ FNR
o FNRa
o FNRa-
o FNRa2-
o FNRi
+ Thylakiod lumen
+ Plastocyanin
o Pc
o Pc+

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Laisk_2009


Laisk A, Eichelmann H, Oja V (2009) Leaf C3 Photosynthesis in silico: Integrated Carbon/Nitrogen Metabolism. In Photosynthesis in silico, Laisk A, Nedbal L, Govindjee, eds, pp 295-322, Springer Netherlands.

Please note that this model is currently under construction on e-photosynthesis.
Annotations
Components
Reactions
Parameters
Simulation
+model: Laisk (2009)
To avoid mistakes and confusions in rewriting of the model, e-photosynthesis uses the same denotation for model state variables as used by the authors in their original files. However, this denotation is a little bit different from denotation of model state variables as shown in the above scheme as published in Laisk et al. (2009). Further, some model state variables or their biochemical pathways are also missing in the scheme. Therefore, below is a table which lists denotations of model state variables as used in e-photosynthesis and their equivalents from the scheme or related model state variables in the scheme.

Denotation in
e-photosynthesis 		Equivalent in the model scheme A related model state variable

ADPGlu

ADPG

-

ATP

ATP

-

CytPCf_

-

Cyt f | PC

E4P

E4P

-

ENf_

-

-

ENm_

-

-

EOP

EOP

-

EP

EP

-

EPG

EPG

-

EPP

EPP

-

ER

ER

-

F26BPc

F26BP

-

FBP

FBP

-

FBPc

FBP

-

HeP

-

F6P | G6P | G1P

HePc

-

F6P | G6P | G1P

HIt

H+

-

NADPH

NADPH

-

Nq

-

-

OXAc

OXA

-

P2GAc

2-PGA

-

P5P

-

Ru5P | R5P | Xu5P

PCpP700_

-

PC | P700

PCpT

PC | P700

PEPc

PEP

-

PGA

PGA

-

PGAc

3-PGA

-

PQ_

-

PQ

PS1A_

-

FeS | Fd

PYRc

PYR

-

RuBP

RuBP

-

S7P

S7P

-

SBP

SBP

-

SuCPc

SP

-

T3P

-

GAP | DHAP

T3Pc

-

GAP | DHAP

TRf_

-

-

TRm_

-

-

UDPGluc

UDPG

-

OP

OP

-


+publication: Laisk (2009)
Laisk A, Eichelmann H, Oja V (2009) Leaf C3 Photosynthesis in silico: Integrated Carbon/Nitrogen Metabolism. In Photosynthesis in silico, Laisk A, Nedbal L, Govindjee, eds, pp 295-322, Springer Netherlands.
DOI:10.1007/978-1-4020-9237-4_13
Model components grouped by compartments:
+Chloroplast stroma
Initial value: 1
Simulation type: fixed
+ADPGlu
Initial value: 0.000006295
Dynamic expression: "V19"-"V20"
Simulation type: ode
+ATP
Initial value: 0.0004245
Dynamic expression: "V12"-"V1"-"V9"-"V19"-"Vo"/2-"V60"
Simulation type: ode
+E4P
Initial value: 0.00004173
Dynamic expression: "V5"-"V6"
Simulation type: ode
+EOP
Initial value: 0.0002966
Dynamic expression: "k_5"*"Ef"*"OP"-"k5"*"EOP"
Simulation type: ode
+EP
Initial value: 0.0007045
Dynamic expression: "k4"*"EPP"-"k_4"*"EP"*"PGA"+"k7"*"EPG"-"k5"*"EP"+"k_5"*"Ef"*"PGA"
Simulation type: ode
+EPG
Initial value: 0.0003206
Dynamic expression: "k6"*"Owc"*"ER"-"k7"*"EPG"
Simulation type: ode
+EPP
Initial value: 0.0002711
Dynamic expression: "k2"*"Cc"*"ER"-"k4"*"EPP"+"k_4"*"PGA"*"EP"
Simulation type: ode
+ER
Initial value: 0.001201
Dynamic expression: "Ef"*"RuBP"*"k1"-"ER"*"k_1"-"ER"*("Cc"*"k2"+"Owc"*"k6")
Simulation type: ode
+FBP
Initial value: 0.0001239
Dynamic expression: "V3"-"V4"
Simulation type: ode
+HeP
Initial value: 0.002901
Dynamic expression: "V4"-"V5"-"V19"
Simulation type: ode
+NADPH
Initial value: 0.0002435
Dynamic expression: "V141"/2-"V64"-("V1"+"Vo"/2)
Simulation type: ode
+OPD
Initial expression: "OPT"-2.0*("EPP"+"EPG"+"RuBP"+"OPOP"+"FBP"+"SBP"+"ATP")-"EP"-"EOP"-"PGA"-"T3P"-"HeP"-"E4P"-"S7P"-"P5P"-"ADP"-"ADPGlu"
Dynamic expression: 2*"V19"+"k7"*"EPG"+"V1"+"V4"+"V7"+"VOPin"-"V12"
Simulation type: ode
+P5P
Initial value: 0.0002352
Dynamic expression: 2*"V8"+"V5"-"V9"
Simulation type: ode
+PGA
Initial value: 0.002463
Dynamic expression: "EPP"*"k4"+"EP"*"k5"-("k_4"*"EP"+"k_5"*"Ef")*"PGA"+"Vo"/2-"V1"-"VPGAout"
Simulation type: ode
+RuBP
Initial value: 0.007723
Dynamic expression: "V9"-"k1"*"Ef"*"RuBP"+"k_1"*"ER"
Simulation type: ode
+S7P
Initial value: 0.0002698
Dynamic expression: "V7"-"V8"
Simulation type: ode
+SBP
Initial value: 0.0000655
Dynamic expression: "V6"-"V7"
Simulation type: ode
+T3P
Initial value: 0.001109
Dynamic expression: "V1"-2*"V3"-"V5"-"V6"-"V8"-"VT3Pout"
Simulation type: ode
+TRf_
Initial value: 0.0008133
Dynamic expression: "RC52"*("Fd_"*"TRf"-"TRf_"*"Fd"/"kE52")
Simulation type: ode
+TRm_
Initial value: 0.0008133
Dynamic expression: "RC54"*("Fd_"*"TRm"-"TRm_"*"Fd"/"kE54")
Simulation type: ode
+Cytosol
Initial value: 1
Simulation type: fixed
+F26BPc
Initial value: 0.00001121
Dynamic expression: "V31"-"V32"
Simulation type: ode
+FBPc
Initial value: 0.0006256
Dynamic expression: "V23"-"V24"
Simulation type: ode
+HePc
Initial value: 0.003532
Dynamic expression: "V24"-"V27"-"V28"
Simulation type: ode
+OXAc
Initial value: 0.0001544
Dynamic expression: "V63"-"V64"
Simulation type: ode
+P2GAc
Initial value: 0.0003424
Dynamic expression: "V61"-"V62"
Simulation type: ode
+PEPc
Initial value: 0.0001701
Dynamic expression: "V62"-"V63"-"V66"
Simulation type: ode
+PGAc
Initial value: 0.002267
Dynamic expression: "VPGAout"*"Vst"/"Vcy"-"V61"
Simulation type: ode
+PYRc
Initial value: 0.0009215
Dynamic expression: "V66"-"V65"/6*"Vst"/"Vcy"
Simulation type: ode
+SuCPc
Initial value: 0.00004772
Dynamic expression: "V28"-"V29"
Simulation type: ode
+T3Pc
Initial value: 0.001723
Dynamic expression: "VT3Pout"*"Vst"/"Vcy"-2*"V23"+"Arev"/"Vcy"
Simulation type: ode
+UDPGluc
Initial value: 0.0007056
Dynamic expression: "V27"-"V28"
Simulation type: ode
+Enzymes
Simulation type: fixed
+ENf_
Initial value: 0.0009053
Dynamic expression: "RC53"*("TRf_"*"ENf"-"ENf_"*"TRf"/"kE53")
Simulation type: ode
+ENm_
Initial value: 0.0008658
Dynamic expression: "RC55"*("TRm_"*"ENm"-"ENm_"*"TRm"/"kE55")
Simulation type: ode
+Thylakoid lumen
Initial value: 1
Simulation type: fixed
+Hlt
Initial value: 0.01034
Dynamic expression: ("V45"+"HER"*"V42")*"Vme"/"Vlu"-"V44"-"HPR"*"SLP"*"V12"*"Vst"/"Vlu"
Simulation type: ode
+Nq
Initial value: 0.9552
Dynamic expression: "RC50"*("QH"-"Nq")
Simulation type: ode
+Thylakoid membrane
Initial value: 1
Simulation type: fixed
+CytPCf_
Initial value: 0.000148
Dynamic expression: "V42"-"V40e"+"V142"
Simulation type: ode
+PCpP700_
Initial value: 0.0002193
Dynamic expression: "V40e"-"ETRPS1"
Simulation type: ode
+PCpT
Initial value: 0.0008107
Dynamic expression: "V40pc"
Simulation type: ode
+PQ_
Initial value: 0.006058
Dynamic expression: ("V45"-"V42")/2+"V46"*"Vst"/"Vme"
Simulation type: ode
+PS1A_
Initial value: 0.000007582
Dynamic expression: ("ETRPS1"-"V142")*"Vme"-("V141"+"V49"+"V65")*"Vst"
Simulation type: ode

Constant quantities

+Achl
Initial value: 36200
Simulation type: fixed
+ADTcs
Initial value: 0.00002
Simulation type: fixed
+ADTs
Initial value: 0.00001
Simulation type: fixed
+Arev
Initial value: 0
Simulation type: fixed
+ATPc
Initial value: 0.0009652
Simulation type: fixed
+a_
Initial value: 2.3025851
Simulation type: fixed
+BFHt
Initial value: 0.003
Simulation type: fixed
+BF_t
Initial value: 0.04
Simulation type: fixed
+Ca
Initial value: 0.00034
Simulation type: fixed
+Cchl1
Initial value: 0.5
Simulation type: fixed
+Cchl2
Initial value: 0.47
Simulation type: fixed
+Ccy
Initial value: 8
Simulation type: fixed
+Chl
Initial value: 0.00055
Simulation type: fixed
+Clu
Initial value: 1
Simulation type: fixed
+Cst
Initial value: 8
Simulation type: fixed
+Cvme
Initial value: 4
Simulation type: fixed
+CytfTs
Initial value: 0.0000015
Simulation type: fixed
+ECytf
Initial value: 0.27
Simulation type: fixed
+Eenf
Initial value: -0.32
Simulation type: fixed
+Eenm
Initial value: -0.33
Simulation type: fixed
+EFd
Initial value: -0.38
Simulation type: fixed
+EFeS
Initial value: -0.4
Simulation type: fixed
+ENAD
Initial value: -0.34
Simulation type: fixed
+ENADP
Initial value: -0.34
Simulation type: fixed
+ENfT
Initial value: 0.001
Simulation type: fixed
+ENmT
Initial value: 0.001
Simulation type: fixed
+EP700
Initial value: 0.365
Simulation type: fixed
+EPC
Initial value: 0.295
Simulation type: fixed
+EPQ
Initial value: 0
Simulation type: fixed
+EQa
Initial value: -0.05
Simulation type: fixed
+Etrf
Initial value: -0.34
Simulation type: fixed
+Etrm
Initial value: -0.34
Simulation type: fixed
+e_
Initial value: 1.6022e-19
Simulation type: fixed
+F0
Initial value: 0.16
Simulation type: fixed
+FarRed
Initial value: 0
Simulation type: fixed
+FdTs
Initial value: 0.000015
Simulation type: fixed
+Fm
Initial value: 0.25
Simulation type: fixed
+Fmd
Initial value: 1
Simulation type: fixed
+Fmdi
Initial value: 0.8
Simulation type: fixed
+G0
Initial value: -8
Simulation type: fixed
+G1
Initial value: 3
Simulation type: fixed
+G10
Initial value: -5
Simulation type: fixed
+G12
Initial value: 7.3
Simulation type: fixed
+G13
Initial value: -1.8
Simulation type: fixed
+G14
Initial value: -0.42
Simulation type: fixed
+G15
Initial value: 0.4
Simulation type: fixed
+G16
Initial value: 1.7
Simulation type: fixed
+G17
Initial value: 0.64
Simulation type: fixed
+G18
Initial value: -0.13
Simulation type: fixed
+G19
Initial value: 1.6
Simulation type: fixed
+G20
Initial value: -8
Simulation type: fixed
+G21
Initial value: 1.8
Simulation type: fixed
+G23
Initial value: -5.5
Simulation type: fixed
+G24
Initial value: -4
Simulation type: fixed
+G25
Initial value: 0.4
Simulation type: fixed
+G26
Initial value: 1.7
Simulation type: fixed
+G27
Initial value: 0.71
Simulation type: fixed
+G28
Initial value: -0.29
Simulation type: fixed
+G29
Initial value: -3.3
Simulation type: fixed
+G3
Initial value: -5.5
Simulation type: fixed
+G30
Initial value: -3
Simulation type: fixed
+G4
Initial value: -4
Simulation type: fixed
+G5
Initial value: 1.4
Simulation type: fixed
+G6
Initial value: -5.5
Simulation type: fixed
+G61
Initial value: 1.1
Simulation type: fixed
+G62
Initial value: 0.4
Simulation type: fixed
+G63
Initial value: -7.63
Simulation type: fixed
+G64
Initial value: -5
Simulation type: fixed
+G66
Initial value: -1
Simulation type: fixed
+G7
Initial value: -4
Simulation type: fixed
+G8
Initial value: 0.1
Simulation type: fixed
+G9
Initial value: -5.2
Simulation type: fixed
+HER
Initial value: 2
Simulation type: fixed
+HPR
Initial value: 4
Simulation type: fixed
+j2r
Initial value: 0
Simulation type: fixed
+k1
Initial value: 50000
Simulation type: fixed
+Ka19PGA
Initial value: 0.012
Simulation type: fixed
+kA4
Initial value: 3
Simulation type: fixed
+kA7
Initial value: 3
Simulation type: fixed
+kA9
Initial value: 5
Simulation type: fixed
+KBt
Initial value: 0.000001
Simulation type: fixed
+kcat
Initial value: 3
Simulation type: fixed
+Ki19OP
Initial value: 0.003
Simulation type: fixed
+Ki24F26BP
Initial value: 0.000001
Simulation type: fixed
+Ki28OP
Initial value: 0.0015
Simulation type: fixed
+Ki31T3P
Initial value: 0.0015
Simulation type: fixed
+Ki32HeP
Initial value: 0.0001
Simulation type: fixed
+Ki32OP
Initial value: 0.001
Simulation type: fixed
+Km024FBP
Initial value: 0.00002
Simulation type: fixed
+Km028F6P
Initial value: 0.00026
Simulation type: fixed
+Km0CO2
Initial value: 0.00001
Simulation type: fixed
+Km10ADP
Initial value: 0.001
Simulation type: fixed
+Km10ATP
Initial value: 0.0001
Simulation type: fixed
+Km10F6P
Initial value: 0.0003
Simulation type: fixed
+Km10FBP
Initial value: 0.001
Simulation type: fixed
+Km11OP
Initial value: 0.00009
Simulation type: fixed
+Km11PGA
Initial value: 0.00009
Simulation type: fixed
+Km11T3P
Initial value: 0.00009
Simulation type: fixed
+Km12ADP
Initial value: 0.0003
Simulation type: fixed
+Km12ATP
Initial value: 0.000001447
Simulation type: fixed
+Km12OP
Initial value: 0.0003
Simulation type: fixed
+Km141Fd
Initial value: 0.001
Simulation type: fixed
+Km141Fd_
Initial value: 0.0001
Simulation type: fixed
+Km141NADP
Initial value: 0.001
Simulation type: fixed
+Km141NADPH
Initial value: 0.0005
Simulation type: fixed
+Km142Cytf
Initial value: 0.001
Simulation type: fixed
+Km142Cytf_
Initial value: 0.001
Simulation type: fixed
+Km142Fd
Initial value: 0.001
Simulation type: fixed
+Km142Fd_
Initial value: 0.0002
Simulation type: fixed
+Km146Owc
Initial value: 0.000003
Simulation type: fixed
+Km19ADPGlu
Initial value: 0.0005
Simulation type: fixed
+Km19ATP
Initial value: 0.0001
Simulation type: fixed
+Km19G1P
Initial value: 0.001
Simulation type: fixed
+Km19OPOP
Initial value: 0.0008
Simulation type: fixed
+Km1ADP
Initial value: 0.0005
Simulation type: fixed
+Km1ATP
Initial value: 0.0003
Simulation type: fixed
+Km1GAP
Initial value: 0.00026
Simulation type: fixed
+Km1OP
Initial value: 0.0026
Simulation type: fixed
+Km1PGA
Initial value: 0.001
Simulation type: fixed
+Km20ADP
Initial value: 0.0006
Simulation type: fixed
+Km20ADPGlu
Initial value: 0.0002
Simulation type: fixed
+Km21ADP
Initial value: 0.0005
Simulation type: fixed
+Km21ATP
Initial value: 0.0003
Simulation type: fixed
+Km21GAP
Initial value: 0.00026
Simulation type: fixed
+Km21OP
Initial value: 0.0026
Simulation type: fixed
+Km21PGA
Initial value: 0.001
Simulation type: fixed
+Km23DHAP
Initial value: 0.00035
Simulation type: fixed
+Km23FBP
Initial value: 0.000019
Simulation type: fixed
+Km23GAP
Initial value: 0.00026
Simulation type: fixed
+Km24F6P
Initial value: 0.000061
Simulation type: fixed
+Km24OP
Initial value: 0.0017
Simulation type: fixed
+Km27G1P
Initial value: 0.00003
Simulation type: fixed
+Km27OPOP
Initial value: 0.00003
Simulation type: fixed
+Km27UDPGlu
Initial value: 0.00013
Simulation type: fixed
+Km27UTP
Initial value: 0.0002
Simulation type: fixed
+Km28SUCP
Initial value: 0.00035
Simulation type: fixed
+Km28UDP
Initial value: 0.00058
Simulation type: fixed
+Km28UDPGlu
Initial value: 0.0001
Simulation type: fixed
+Km29OP
Initial value: 0.002
Simulation type: fixed
+Km29SUC
Initial value: 0.01
Simulation type: fixed
+Km29SUCP
Initial value: 0.00005
Simulation type: fixed
+Km31F6P
Initial value: 0.001
Simulation type: fixed
+Km31OP
Initial value: 0.001
Simulation type: fixed
+Km32F26BP
Initial value: 0.000000001
Simulation type: fixed
+Km32T3P
Initial value: 0.002
Simulation type: fixed
+Km3DHAP
Initial value: 0.00035
Simulation type: fixed
+Km3FBP
Initial value: 0.000019
Simulation type: fixed
+Km3GAP
Initial value: 0.00026
Simulation type: fixed
+Km42Cytf
Initial value: 0.0001
Simulation type: fixed
+Km42Cytf_
Initial value: 0.0005
Simulation type: fixed
+Km42PQ
Initial value: 0.002
Simulation type: fixed
+Km42PQ_
Initial value: 0.001
Simulation type: fixed
+km45NADP_del
Initial value: 0.000001
Simulation type: fixed
+Km46NADP
Initial value: 0.000001
Simulation type: fixed
+Km46NADPH
Initial value: 0.000001
Simulation type: fixed
+Km46PQ
Initial value: 0.000001
Simulation type: fixed
+Km46PQ_
Initial value: 0.000001
Simulation type: fixed
+Km4F6P
Initial value: 0.000061
Simulation type: fixed
+Km4FBP
Initial value: 0.000031
Simulation type: fixed
+Km4OP
Initial value: 0.0017
Simulation type: fixed
+Km5GAP
Initial value: 0.00026
Simulation type: fixed
+Km5P5P
Initial value: 0.00059
Simulation type: fixed
+Km60ATP
Initial value: 0.000005
Simulation type: fixed
+Km61P2GA
Initial value: 0.0001
Simulation type: fixed
+Km61P3GA
Initial value: 0.001
Simulation type: fixed
+Km62P2GA
Initial value: 0.0003
Simulation type: fixed
+Km62PEP
Initial value: 0.0001
Simulation type: fixed
+Km63CO2
Initial value: 0.000002
Simulation type: fixed
+Km63OXA
Initial value: 0.0005
Simulation type: fixed
+Km63PEP
Initial value: 0.0001
Simulation type: fixed
+Km64MAL
Initial value: 0.001
Simulation type: fixed
+Km64NADP
Initial value: 0.001
Simulation type: fixed
+Km64NADPH
Initial value: 0.00015
Simulation type: fixed
+Km64OXA
Initial value: 0.00005
Simulation type: fixed
+Km65Fd_
Initial value: 0.003
Simulation type: fixed
+Km65PYR
Initial value: 0.00001
Simulation type: fixed
+Km66PEP
Initial value: 0.0001
Simulation type: fixed
+Km66PYR
Initial value: 0.0001
Simulation type: fixed
+Km6DHAP
Initial value: 0.00035
Simulation type: fixed
+Km6E4P
Initial value: 0.00017
Simulation type: fixed
+Km6SBP
Initial value: 0.000019
Simulation type: fixed
+Km7OP
Initial value: 0.0064
Simulation type: fixed
+Km7S7P
Initial value: 0.000015
Simulation type: fixed
+Km7SBP
Initial value: 0.000012
Simulation type: fixed
+Km8F6P
Initial value: 0.00052
Simulation type: fixed
+Km8GAP
Initial value: 0.000087
Simulation type: fixed
+Km8P5P
Initial value: 0.00011
Simulation type: fixed
+Km8S7P
Initial value: 0.00017
Simulation type: fixed
+Km9ADP
Initial value: 0.000086
Simulation type: fixed
+Km9ATP
Initial value: 0.0005
Simulation type: fixed
+Km9Ru5P
Initial value: 0.000035
Simulation type: fixed
+Km9RuBP
Initial value: 0.000094
Simulation type: fixed
+Ksp
Initial value: 99
Simulation type: fixed
+Kx28OP
Initial value: 0.0084
Simulation type: fixed
+k_
Initial value: 1.3807e-23
Simulation type: fixed
+k_1
Initial value: 0.9
Simulation type: fixed
+k_2
Initial value: 0
Simulation type: fixed
+k_4
Initial value: 0
Simulation type: fixed
+k_5
Initial value: 70000
Simulation type: fixed
+k_6
Initial value: 0
Simulation type: fixed
+k_7
Initial value: 0
Simulation type: fixed
+Labs
Initial value: 0.87
Simulation type: fixed
+MALc
Initial value: 0.0005
Simulation type: fixed
+n2r
Initial value: 700
Simulation type: fixed
+Na
Initial value: 6.022e23
Simulation type: fixed
+NADH
Initial value: 0.0001
Simulation type: fixed
+NADPTs
Initial value: 0.00002
Simulation type: fixed
+NADTs
Initial value: 0.00002
Simulation type: fixed
+Oa
Initial value: 0.21
Simulation type: fixed
+OPOP
Initial value: 0.000001
Simulation type: fixed
+OPOPc
Initial value: 0.00004
Simulation type: fixed
+OPTcs
Initial value: 0.0003
Simulation type: fixed
+OPTs
Initial value: 0.0005
Simulation type: fixed
+Patm
Initial value: 96440
Simulation type: fixed
+PCTs
Initial value: 0.000003567
Simulation type: fixed
+PFD
Initial value: 0.002276
Simulation type: fixed
+pHc
Initial value: 7.8
Simulation type: fixed
+pHs
Initial value: 8.05
Simulation type: fixed
+pK1ADPGlu
Initial value: 3.93
Simulation type: fixed
+pK1AMP
Initial value: 3.74
Simulation type: fixed
+pK1PGA
Initial value: 1.42
Simulation type: fixed
+pK2ADP
Initial value: 3.93
Simulation type: fixed
+pK2ADPGlu
Initial value: 6.83
Simulation type: fixed
+pK2AMP
Initial value: 6.45
Simulation type: fixed
+pK2MP
Initial value: 6.65
Simulation type: fixed
+pK2OP
Initial value: 6.78
Simulation type: fixed
+pK2PGA
Initial value: 3.42
Simulation type: fixed
+pK3ADP
Initial value: 6.83
Simulation type: fixed
+pK3ATP
Initial value: 4.06
Simulation type: fixed
+pK3BP
Initial value: 6.02
Simulation type: fixed
+pK3OP
Initial value: 12.4
Simulation type: fixed
+pK3OPOP
Initial value: 6.7
Simulation type: fixed
+pK3PGA
Initial value: 7.1
Simulation type: fixed
+pK42
Initial value: 5.2
Simulation type: fixed
+pK4ATP
Initial value: 7.06
Simulation type: fixed
+pK4BP
Initial value: 6.82
Simulation type: fixed
+pK4OPOP
Initial value: 9.4
Simulation type: fixed
+pK50
Initial value: 5.65
Simulation type: fixed
+PQTs
Initial value: 0.000015
Simulation type: fixed
+PS1Ts
Initial value: 0.00000155
Simulation type: fixed
+PS2Ts
Initial value: 0.00000201
Simulation type: fixed
+RC40
Initial value: 1000
Simulation type: fixed
+RC44
Initial value: 0
Simulation type: fixed
+RC45
Initial value: 1000000000
Simulation type: fixed
+RC49
Initial value: 0.01
Simulation type: fixed
+RC50
Initial value: 0.1
Simulation type: fixed
+RC52
Initial value: 1000
Simulation type: fixed
+RC53
Initial value: 1000
Simulation type: fixed
+RC54
Initial value: 1000
Simulation type: fixed
+RC55
Initial value: 1000
Simulation type: fixed
+Rgas
Initial value: 8.3144
Simulation type: fixed
+Rgw
Initial value: 0.38
Simulation type: fixed
+Rmd
Initial value: 0.015
Simulation type: fixed
+Rmit
Initial value: 0
Simulation type: fixed
+R_
Initial value: 0.0019865
Simulation type: fixed
+SLP
Initial value: 1
Simulation type: fixed
+SuCc
Initial value: 0.05
Simulation type: fixed
+Tau2
Initial value: 0.000615
Simulation type: fixed
+Tleaf
Initial value: 22.5
Simulation type: fixed
+TRfT
Initial value: 0.001
Simulation type: fixed
+TRmT
Initial value: 0.001
Simulation type: fixed
+UDTcs
Initial value: 0.00001
Simulation type: fixed
+Vms0
Initial value: 0.000148
Simulation type: fixed
+Vms1
Initial value: 0.0003
Simulation type: fixed
+Vms10
Initial value: 0
Simulation type: fixed
+Vms11
Initial value: 0.001
Simulation type: fixed
+Vms12
Initial value: 0.0005
Simulation type: fixed
+Vms141
Initial value: 0.0004
Simulation type: fixed
+Vms142
Initial value: 0.001
Simulation type: fixed
+Vms146
Initial value: 0
Simulation type: fixed
+Vms19
Initial value: 0.00002
Simulation type: fixed
+Vms20
Initial value: 0.00005
Simulation type: fixed
+Vms21
Initial value: 0.000003613
Simulation type: fixed
+Vms23
Initial value: 0.0001
Simulation type: fixed
+Vms24
Initial value: 0.00002
Simulation type: fixed
+Vms27
Initial value: 0.00007226
Simulation type: fixed
+Vms28
Initial value: 0.0000013
Simulation type: fixed
+Vms29
Initial value: 0.00001807
Simulation type: fixed
+Vms3
Initial value: 0.0004
Simulation type: fixed
+Vms31
Initial value: 0.000000001806
Simulation type: fixed
+Vms32
Initial value: 0.000000000003613
Simulation type: fixed
+Vms4
Initial value: 0.0002
Simulation type: fixed
+Vms42
Initial value: 0.0003
Simulation type: fixed
+Vms46
Initial value: 0
Simulation type: fixed
+Vms6
Initial value: 0.0002
Simulation type: fixed
+Vms60
Initial value: 0
Simulation type: fixed
+Vms61
Initial value: 0.0001
Simulation type: fixed
+Vms62
Initial value: 0.0001
Simulation type: fixed
+Vms63
Initial value: 0.0000015
Simulation type: fixed
+Vms64
Initial value: 0.000001
Simulation type: fixed
+Vms65
Initial value: 0.00001
Simulation type: fixed
+Vms66
Initial value: 0.0001
Simulation type: fixed
+Vms7
Initial value: 0.0001
Simulation type: fixed
+Vms9
Initial value: 0.01
Simulation type: fixed
+Vms_5
Initial value: 0.003
Simulation type: fixed
+Vms_8
Initial value: 0.001445
Simulation type: fixed
+WDC
Initial value: 0.00000000000001
Simulation type: fixed

Assigned quantities

+A2
Initial expression: ("PS2T"*"j2d"*"k2r"*"k2r"+"PS2T"*"j2d"*"j2d"*"k2r"+"PS2T"*"j2d"*"j2d"*"n2d"+"PS2T"*"k2r"*"k2r"*"n2r"+"PS2T"*"j2d"*"j2r"*"k2r"+"PS2T"*"j2d"*"k2d"*"k2r"+"PS2T"*"j2d"*"k2r"*"n2d"+"PS2T"*"j2d"*"k2r"*"n2r")/("j2d"*"k2d"*"k2d"+"j2d"*"j2d"*"k2d"+"j2d"*"k2r"*"k2r"+"j2r"*"k2d"*"k2d"+"j2d"*"j2d"*"k2r"+"j2r"*"j2r"*"k2d"+"j2r"*"k2r"*"k2r"+"j2r"*"j2r"*"k2r"+"j2d"*"j2d"*"n2d"+"j2r"*"j2r"*"n2r"+"k2d"*"k2d"*"n2d"+"k2r"*"k2r"*"n2r"+2*"j2d"*"j2r"*"k2d"+2*"j2d"*"j2r"*"k2r"+2*"j2d"*"k2d"*"k2r"+2*"j2r"*"k2d"*"k2r"+"j2d"*"j2r"*"n2d"+"j2d"*"j2r"*"n2r"+"j2d"*"k2d"*"n2d"+"j2d"*"k2d"*"n2r"+"j2d"*"k2r"*"n2d"+"j2r"*"k2d"*"n2d"+"j2d"*"k2r"*"n2r"+"j2r"*"k2d"*"n2r"+"j2r"*"k2r"*"n2d"+"j2r"*"k2r"*"n2r"+"k2d"*"k2r"*"n2d"+"k2d"*"k2r"*"n2r")
Simulation type: assignment
+Ac
Initial expression: "Vst"*("Vc"-"Vo"/2)-"Rmit"
Simulation type: assignment
+ACTf
Initial expression: "ENf_"/"ENfT"
Simulation type: assignment
+ACTm
Initial expression: "ENm_"/"ENmT"
Simulation type: assignment
+ADP
Initial expression: "ADT"-"ATP"
Simulation type: assignment
+ADPc
Initial expression: "ADTc"-"ATPc"
Simulation type: assignment
+ADT
Initial expression: "ADTs"/"Vst"
Simulation type: assignment
+ADTc
Initial expression: "ADTcs"/"Vcy"
Simulation type: assignment
+AI
Initial expression: "DenAI"*"Vm11"/"Den11"
Simulation type: assignment
+AII
Initial expression: "DenAII"*"Vm11"/"Den11"
Simulation type: assignment
+B2
Initial expression: ("PS2T"*"j2d"*"k2d"*"k2d"+"PS2T"*"j2d"*"j2d"*"k2d"+"PS2T"*"j2d"*"j2r"*"k2d"+"PS2T"*"j2d"*"k2d"*"k2r"+"PS2T"*"j2d"*"j2r"*"n2r"+"PS2T"*"j2d"*"k2d"*"n2r"+"PS2T"*"j2r"*"k2r"*"n2r"+"PS2T"*"k2d"*"k2r"*"n2r")/("j2d"*"k2d"*"k2d"+"j2d"*"j2d"*"k2d"+"j2d"*"k2r"*"k2r"+"j2r"*"k2d"*"k2d"+"j2d"*"j2d"*"k2r"+"j2r"*"j2r"*"k2d"+"j2r"*"k2r"*"k2r"+"j2r"*"j2r"*"k2r"+"j2d"*"j2d"*"n2d"+"j2r"*"j2r"*"n2r"+"k2d"*"k2d"*"n2d"+"k2r"*"k2r"*"n2r"+2*"j2d"*"j2r"*"k2d"+2*"j2d"*"j2r"*"k2r"+2*"j2d"*"k2d"*"k2r"+2*"j2r"*"k2d"*"k2r"+"j2d"*"j2r"*"n2d"+"j2d"*"j2r"*"n2r"+"j2d"*"k2d"*"n2d"+"j2d"*"k2d"*"n2r"+"j2d"*"k2r"*"n2d"+"j2r"*"k2d"*"n2d"+"j2d"*"k2r"*"n2r"+"j2r"*"k2d"*"n2r"+"j2r"*"k2r"*"n2d"+"j2r"*"k2r"*"n2r"+"k2d"*"k2r"*"n2d"+"k2d"*"k2r"*"n2r")
Simulation type: assignment
+Bc
Initial expression: exp(401.0/(105.7+"Tleaf")-3.252)
Simulation type: assignment
+Bo
Initial expression: exp(131.2/(72.9+"Tleaf")-4.815)
Simulation type: assignment
+C2
Initial expression: ("PS2T"*"j2r"*"k2r"*"k2r"+"PS2T"*"j2r"*"j2r"*"k2r"+"PS2T"*"j2d"*"j2r"*"k2r"+"PS2T"*"j2r"*"k2d"*"k2r"+"PS2T"*"j2d"*"j2r"*"n2d"+"PS2T"*"j2d"*"k2d"*"n2d"+"PS2T"*"j2r"*"k2r"*"n2d"+"PS2T"*"k2d"*"k2r"*"n2d")/("j2d"*"k2d"*"k2d"+"j2d"*"j2d"*"k2d"+"j2d"*"k2r"*"k2r"+"j2r"*"k2d"*"k2d"+"j2d"*"j2d"*"k2r"+"j2r"*"j2r"*"k2d"+"j2r"*"k2r"*"k2r"+"j2r"*"j2r"*"k2r"+"j2d"*"j2d"*"n2d"+"j2r"*"j2r"*"n2r"+"k2d"*"k2d"*"n2d"+"k2r"*"k2r"*"n2r"+2*"j2d"*"j2r"*"k2d"+2*"j2d"*"j2r"*"k2r"+2*"j2d"*"k2d"*"k2r"+2*"j2r"*"k2d"*"k2r"+"j2d"*"j2r"*"n2d"+"j2d"*"j2r"*"n2r"+"j2d"*"k2d"*"n2d"+"j2d"*"k2d"*"n2r"+"j2d"*"k2r"*"n2d"+"j2r"*"k2d"*"n2d"+"j2d"*"k2r"*"n2r"+"j2r"*"k2d"*"n2r"+"j2r"*"k2r"*"n2d"+"j2r"*"k2r"*"n2r"+"k2d"*"k2r"*"n2d"+"k2d"*"k2r"*"n2r")
Simulation type: assignment
+Caw
Initial expression: "Ca"*"Patm"/"Rgas"/"TKalv"/1000*"Bc"
Simulation type: assignment
+Cc
Initial expression: ("Caw"/("Rgw"+"Rmd")+"Vst"*"k6"*"Owc"*"ER"/2+"Rmit")/(1/("Rgw"+"Rmd")+"Vst"*"k2"*"ER")
Simulation type: assignment
+Chl1
Initial expression: "Chl"*"Cchl1"
Simulation type: assignment
+Chl2
Initial expression: "Chl"*"Cchl2"
Simulation type: assignment
+CytF
Initial expression: "CytfT"-"CytF_"
Simulation type: assignment
+CytfT
Initial expression: "CytfTs"/"Vme"
Simulation type: assignment
+CytF_
Initial expression: "CytPCf_"-"PCf_"
Simulation type: assignment
+CytPCf
Initial expression: "CytPCfT" - "CytPCf_"
Simulation type: assignment
+CytPCfT
Initial expression: "CytfT"+"PCfT"
Simulation type: assignment
+D2
Initial expression: ("PS2T"*"j2r"*"k2d"*"k2d"+"PS2T"*"j2r"*"j2r"*"k2d"+"PS2T"*"j2r"*"j2r"*"n2r"+"PS2T"*"k2d"*"k2d"*"n2d"+"PS2T"*"j2d"*"j2r"*"k2d"+"PS2T"*"j2r"*"k2d"*"k2r"+"PS2T"*"j2r"*"k2d"*"n2d"+"PS2T"*"j2r"*"k2d"*"n2r")/("j2d"*"k2d"*"k2d"+"j2d"*"j2d"*"k2d"+"j2d"*"k2r"*"k2r"+"j2r"*"k2d"*"k2d"+"j2d"*"j2d"*"k2r"+"j2r"*"j2r"*"k2d"+"j2r"*"k2r"*"k2r"+"j2r"*"j2r"*"k2r"+"j2d"*"j2d"*"n2d"+"j2r"*"j2r"*"n2r"+"k2d"*"k2d"*"n2d"+"k2r"*"k2r"*"n2r"+2*"j2d"*"j2r"*"k2d"+2*"j2d"*"j2r"*"k2r"+2*"j2d"*"k2d"*"k2r"+2*"j2r"*"k2d"*"k2r"+"j2d"*"j2r"*"n2d"+"j2d"*"j2r"*"n2r"+"j2d"*"k2d"*"n2d"+"j2d"*"k2d"*"n2r"+"j2d"*"k2r"*"n2d"+"j2r"*"k2d"*"n2d"+"j2d"*"k2r"*"n2r"+"j2r"*"k2d"*"n2r"+"j2r"*"k2r"*"n2d"+"j2r"*"k2r"*"n2r"+"k2d"*"k2r"*"n2d"+"k2d"*"k2r"*"n2r")
Simulation type: assignment
+Den
Initial expression: 1+("F6Pc"/"Km28F6Pc")*("F6Pc"/"Km28F6Pc")+"UDPGluc"/"Km28UDPGluc"+"SuCPc"/"Km28SUCPc"+"UDPc"/"Km28UDPc"+("F6Pc"/"Km28F6Pc")*("F6Pc"/"Km28F6Pc")*"UDPGluc"/"Km28UDPGluc"+"UDPc"/"Km28UDPc"*"SuCPc"/"Km28SUCPc"+"OPc"/"Ki28OPc"
Simulation type: assignment
+Den11
Initial expression: "DenAI"+"DenAII"+"DenAI"*"DenAII"
Simulation type: assignment
+Den12
Initial expression: 1+"ADP"/"Km12ADPs"+"OPATP"/"Km12OPs"+"ADP"*"OPATP"/"Km12ADPs"/"Km12OPs"+"ATP"/"Km12ATPSs"
Simulation type: assignment
+Den58
Initial expression: 1+(1+"GAP"/"Km5GAPs")*("F6P"/"Km8F6Ps"+"S7P"/"Km8S7Ps")+"GAP"/"Km8GAPs"+1/"Km8P5Ps"*("Xu5P"*(1+"E4P"*"Ri5P"/"Km5P5Ps")+"E4P"+"Ri5P")
Simulation type: assignment
+DenAI
Initial expression: "OP"/"Km11OPs"+"PGA"/"Km11PGAs"+"T3P"/"Km11T3Ps"
Simulation type: assignment
+DenAII
Initial expression: "OPc"/"Km11OPc"+"PGAc"/"Km11PGAc"+"T3Pc"/"Km11T3Pc"
Simulation type: assignment
+DenE4P
Initial expression: 1+"E4P"/"Km6E4Ps"+"DHAP"/"Km6DHAPs"+"SBP"/"Km6SBPs"+"E4P"*"DHAP"/"Km6E4Ps"/"Km6DHAPs"
Simulation type: assignment
+DenFBP
Initial expression: 1+"FBP"/"Km4FBPs"+"F6P"/"Km4F6Ps"+"F6P"*"OP"/"Km4F6Ps"/"Km4OPs"
Simulation type: assignment
+DenGAP
Initial expression: 1+"GAP"/"Km3GAPs"+"DHAP"/"Km3DHAPs"+"FBP"/"Km3FBPs"+"GAP"*"DHAP"/"Km3GAPs"/"Km3DHAPs"
Simulation type: assignment
+DenMAL
Initial expression: "Km64NADPH"*"Km64OXA"*(1+"NADPH"/"Km64NADPH"+"OXA"/"Km64OXA"+"MAL"/"Km64MAL"+"NADP"/"Km64NADP"+"NADPH"/"Km64NADPH"*"OXA"/"Km64OXA"+"MAL"/"Km64MAL"*"NADP"/"Km64NADP")
Simulation type: assignment
+DenPGA
Initial expression: 1+"PGA"/"Km1PGAs"+"ATP"/"Km1ATPs"+"ADP"/"Km1ADPs"+"GAP"/"Km1GAPs"+"OP"/"Km1OPs"+"PGA"/"Km1PGAs"*"ATP"/"Km1ATPs"+"ADP"/"Km1ADPs"*"GAP"/"Km1GAPs"*"OP"/"Km1OPs"
Simulation type: assignment
+DHAP
Initial expression: "T3P"-"GAP"
Simulation type: assignment
+DHAPc
Initial expression: "T3Pc"-"GAPc"
Simulation type: assignment
+E0T
Initial expression: "Vm0"/"kcat"
Simulation type: assignment
+Ef
Initial expression: "E0T"-"ER"-"EPP"-"EPG"-"EP"-"EOP"
Simulation type: assignment
+ENf
Initial expression: "ENfT"-"ENf_"
Simulation type: assignment
+ENm
Initial expression: "ENmT"-"ENm_"
Simulation type: assignment
+ERChl1
Initial expression: "PFD"*"Labs"/"Chl"+0.94*"FarRed"/"Chl1"
Simulation type: assignment
+ERChl2
Initial expression: "PFD"*"Labs"/"Chl"+0.06*"FarRed"/"Chl2"
Simulation type: assignment
+ERPS1
Initial expression: "PSU1"*"ERChl1"
Simulation type: assignment
+ERPS2
Initial expression: "PSU2"*"ERChl2"/(1+"kf"+"Nq"*"kN"+"ki")
Simulation type: assignment
+ETRPS1
Initial expression: "ERPS1"*"P700_"/"PS1T"*"FeS"
Simulation type: assignment
+F6P
Initial expression: "HeP"*"kE15"/(1+"kE16"+"kE15")
Simulation type: assignment
+F6Pc
Initial expression: "HePc"*"kE25"/(1+"kE26"+"kE25")
Simulation type: assignment
+Fd
Initial expression: "FdT"-"Fd_"
Simulation type: assignment
+FdT
Initial expression: "FdTs"/"Vst"
Simulation type: assignment
+Fd_
Initial expression: ("kE48"*"FeS_"*"FdT")/("FeS"+"kE48"*"FeS_")
Simulation type: assignment
+FeS
Initial expression: "FeST"-"FeS_"
Simulation type: assignment
+FeST
Initial expression: "PS1T"
Simulation type: assignment
+FeS_
Initial expression: (-1*"par11"+sqrt("par11"*"par11"-4*"par10"*"par12"))/(2*"par10")
Simulation type: assignment
+Fl
Initial expression: ("FlA"*"PS2A"+"FlA_"*"PS2A_")/"PS2T"
Simulation type: assignment
+Fl0
Initial expression: "FlA"
Simulation type: assignment
+FlA
Initial expression: "kf"/(1+"kf"+"Nq"*"kN"+"ki")
Simulation type: assignment
+FlA_
Initial expression: "kf"/("kf"+"Nq"*"kN"+"ki")
Simulation type: assignment
+Flm
Initial expression: "FlA_"
Simulation type: assignment
+G1P
Initial expression: "HeP"*"kE16"/(1+"kE16"+"kE15")
Simulation type: assignment
+G1Pc
Initial expression: "HePc"*"kE26"/(1+"kE26"+"kE25")
Simulation type: assignment
+G6P
Initial expression: "HeP"/(1+"kE16"+"kE15")
Simulation type: assignment
+G6Pc
Initial expression: "HePc"/(1+"kE26"+"kE25")
Simulation type: assignment
+GAP
Initial expression: "T3P"/(1+"kE13")
Simulation type: assignment
+GAPc
Initial expression: "T3Pc"/(1+"kE13")
Simulation type: assignment
+HIfs
Initial expression: exp("a_"*(-"pHs"))
Simulation type: assignment
+HIft
Initial expression: "Hlt"/1000
Simulation type: assignment
+HIrc
Initial expression: exp("a_"*(-"pHc"+7))
Simulation type: assignment
+HIrs
Initial expression: exp("a_"*(-"pHs"+7))
Simulation type: assignment
+I11
Initial expression: exp("a_"*("pHs"-"pK1PGA"))
Simulation type: assignment
+I110
Initial expression: exp("a_"*("pHc"-"pK1PGA"))
Simulation type: assignment
+I111
Initial expression: exp("a_"*("pHc"-2.12))
Simulation type: assignment
+I112
Initial expression: exp("a_"*("pHc"-2.12))
Simulation type: assignment
+I113
Initial expression: exp("a_"*("pHc"-1))
Simulation type: assignment
+I114
Initial expression: exp("a_"*("pHc"-1))
Simulation type: assignment
+I115
Initial expression: exp("a_"*("pHc"-"pK1AMP"))
Simulation type: assignment
+I116
Initial expression: exp("a_"*("pHc"-2.12))
Simulation type: assignment
+I117
Initial expression: exp("a_"*("pHc"-2.12))
Simulation type: assignment
+I118
Initial expression: exp("a_"*("pHc"-"pK1ADPGlu"))
Simulation type: assignment
+I119
Initial expression: exp("a_"*(7-"pK1PGA"))
Simulation type: assignment
+I12
Initial expression: exp("a_"*("pHs"-2.12))
Simulation type: assignment
+I120
Initial expression: exp("a_"*(7-2.12))
Simulation type: assignment
+I121
Initial expression: exp("a_"*(7-2.12))
Simulation type: assignment
+I122
Initial expression: exp("a_"*(7-1))
Simulation type: assignment
+I123
Initial expression: exp("a_"*(7-1))
Simulation type: assignment
+I124
Initial expression: exp("a_"*(7-"pK1AMP"))
Simulation type: assignment
+I125
Initial expression: exp("a_"*(7-2.12))
Simulation type: assignment
+I126
Initial expression: exp("a_"*(7-2.12))
Simulation type: assignment
+I127
Initial expression: exp("a_"*(7-"pK1ADPGlu"))
Simulation type: assignment
+I13
Initial expression: exp("a_"*("pHs"-2.12))
Simulation type: assignment
+I14
Initial expression: exp("a_"*("pHs"-1))
Simulation type: assignment
+I15
Initial expression: exp("a_"*("pHs"-1))
Simulation type: assignment
+I16
Initial expression: exp("a_"*("pHs"-"pK1AMP"))
Simulation type: assignment
+I17
Initial expression: exp("a_"*("pHs"-2.12))
Simulation type: assignment
+I18
Initial expression: exp("a_"*("pHs"-2.12))
Simulation type: assignment
+I19
Initial expression: exp("a_"*("pHs"-"pK1ADPGlu"))
Simulation type: assignment
+I21
Initial expression: exp("a_"*(2*"pHs"-"pK1PGA"-"pK2PGA"))
Simulation type: assignment
+I210
Initial expression: exp("a_"*(2*"pHc"-"pK1PGA"-"pK2PGA"))
Simulation type: assignment
+I211
Initial expression: exp("a_"*(2*"pHc"-2.12-2.12))
Simulation type: assignment
+I212
Initial expression: exp("a_"*(2*"pHc"-2.12-"pK2MP"))
Simulation type: assignment
+I213
Initial expression: exp("a_"*(2*"pHc"-1-2))
Simulation type: assignment
+I214
Initial expression: exp("a_"*(2*"pHc"-1-"pK2ADP"))
Simulation type: assignment
+I215
Initial expression: exp("a_"*(2*"pHc"-"pK1AMP"-"pK2AMP"))
Simulation type: assignment
+I216
Initial expression: exp("a_"*(2*"pHc"-2.12-"pK2OP"))
Simulation type: assignment
+I217
Initial expression: exp("a_"*(2*"pHc"-2.12-2.12))
Simulation type: assignment
+I218
Initial expression: exp("a_"*(2*"pHc"-"pK1ADPGlu"-"pK2ADPGlu"))
Simulation type: assignment
+I219
Initial expression: exp("a_"*(2*7-"pK1PGA"-"pK2PGA"))
Simulation type: assignment
+I22
Initial expression: exp("a_"*(2*"pHs"-2.12-2.12))
Simulation type: assignment
+I220
Initial expression: exp("a_"*(2*7-2.12-2.12))
Simulation type: assignment
+I221
Initial expression: exp("a_"*(2*7-2.12-"pK2MP"))
Simulation type: assignment
+I222
Initial expression: exp("a_"*(2*7-1-2))
Simulation type: assignment
+I223
Initial expression: exp("a_"*(2*7-1-"pK2ADP"))
Simulation type: assignment
+I224
Initial expression: exp("a_"*(2*7-"pK1AMP"-"pK2AMP"))
Simulation type: assignment
+I225
Initial expression: exp("a_"*(2*7-2.12-"pK2OP"))
Simulation type: assignment
+I226
Initial expression: exp("a_"*(2*7-2.12-2.12))
Simulation type: assignment
+I227
Initial expression: exp("a_"*(2*7-"pK1ADPGlu"-"pK2ADPGlu"))
Simulation type: assignment
+I23
Initial expression: exp("a_"*(2*"pHs"-2.12-"pK2MP"))
Simulation type: assignment
+I24
Initial expression: exp("a_"*(2*"pHs"-1-2))
Simulation type: assignment
+I25
Initial expression: exp("a_"*(2*"pHs"-1-"pK2ADP"))
Simulation type: assignment
+I26
Initial expression: exp("a_"*(2*"pHs"-"pK1AMP"-"pK2AMP"))
Simulation type: assignment
+I27
Initial expression: exp("a_"*(2*"pHs"-2.12-"pK2OP"))
Simulation type: assignment
+I28
Initial expression: exp("a_"*(2*"pHs"-2.12-2.12))
Simulation type: assignment
+I29
Initial expression: exp("a_"*(2*"pHs"-"pK1ADPGlu"-pK2ADPGlu))
Simulation type: assignment
+I2ADPGlu
Initial expression: "I29"/"SUM9"
Simulation type: assignment
+I2ADPGlu7
Initial expression: "I227"/"SUM27"
Simulation type: assignment
+I2ADPGluc
Initial expression: "I218"/"SUM18"
Simulation type: assignment
+I2AMP
Initial expression: "I26"/"SUM6"
Simulation type: assignment
+I2AMP7
Initial expression: "I224"/"SUM24"
Simulation type: assignment
+I2AMPc
Initial expression: "I215"/"SUM15"
Simulation type: assignment
+I2MP
Initial expression: "I23"/"SUM3"
Simulation type: assignment
+I2MP7
Initial expression: "I221"/"SUM21"
Simulation type: assignment
+I2MPc
Initial expression: "I212"/"SUM12"
Simulation type: assignment
+I2OP
Initial expression: "I27"/"SUM7"
Simulation type: assignment
+I2OP7
Initial expression: "I225"/"SUM25"
Simulation type: assignment
+I2OPc
Initial expression: "I216"/"SUM16"
Simulation type: assignment
+I2PGA
Initial expression: "I21"/"SUM1"
Simulation type: assignment
+I2PGAc
Initial expression: "I210"/"SUM10"
Simulation type: assignment
+I31
Initial expression: exp("a_"*(3*"pHs"-"pK1PGA"-"pK2PGA"-"pK3PGA"))
Simulation type: assignment
+I310
Initial expression: exp("a_"*(3*"pHc"-"pK1PGA"-"pK2PGA"-"pK3PGA"))
Simulation type: assignment
+I311
Initial expression: exp("a_"*(3*"pHc"-2.12-2.12-"pK3BP"))
Simulation type: assignment
+I312
Initial expression: exp("a_"*(3*"pHc"-2.12-"pK2MP"-14))
Simulation type: assignment
+I313
Initial expression: exp("a_"*(3*"pHc"-1-2-"pK3ATP"))
Simulation type: assignment
+I314
Initial expression: exp("a_"*(3*"pHc"-1-"pK2ADP"-"pK3ADP"))
Simulation type: assignment
+I315
Initial expression: exp("a_"*(3*"pHc"-"pK1AMP"-"pK2AMP"-14))
Simulation type: assignment
+I316
Initial expression: exp("a_"*(3*"pHc"-2.12-"pK2OP"-"pK3OP"))
Simulation type: assignment
+I317
Initial expression: exp("a_"*(3*"pHc"-2.12-2.12-"pK3OPOP"))
Simulation type: assignment
+I318
Initial expression: exp("a_"*(3*"pHc"-"pK1ADPGlu"-"pK2ADPGlu"-14))
Simulation type: assignment
+I319
Initial expression: exp("a_"*(3*7-"pK1PGA"-"pK2PGA"-"pK3PGA"))
Simulation type: assignment
+I32
Initial expression: exp("a_"*(3*"pHs"-2.12-2.12-"pK3BP"))
Simulation type: assignment
+I320
Initial expression: exp("a_"*(3*7-2.12-2.12-"pK3BP"))
Simulation type: assignment
+I321
Initial expression: exp("a_"*(3*7-2.12-"pK2MP"-14))
Simulation type: assignment
+I322
Initial expression: exp("a_"*(3*7-1-2-"pK3ATP"))
Simulation type: assignment
+I323
Initial expression: exp("a_"*(3*7-1-"pK2ADP"-"pK3ADP"))
Simulation type: assignment
+I324
Initial expression: exp("a_"*(3*7-"pK1AMP"-"pK2AMP"-14))
Simulation type: assignment
+I325
Initial expression: exp("a_"*(3*7-2.12-"pK2OP"-"pK3OP"))
Simulation type: assignment
+I326
Initial expression: exp("a_"*(3*7-2.12-2.12-"pK3OPOP"))
Simulation type: assignment
+I327
Initial expression: exp("a_"*(3*7-"pK1ADPGlu"-"pK2ADPGlu"-14))
Simulation type: assignment
+I33
Initial expression: exp("a_"*(3*"pHs"-2.12-"pK2MP"-14))
Simulation type: assignment
+I34
Initial expression: exp("a_"*(3*"pHs"-1-2-"pK3ATP"))
Simulation type: assignment
+I35
Initial expression: exp("a_"*(3*"pHs"-1-"pK2ADP"-"pK3ADP"))
Simulation type: assignment
+I36
Initial expression: exp("a_"*(3*"pHs"-"pK1AMP"-"pK2AMP"-14))
Simulation type: assignment
+I37
Initial expression: exp("a_"*(3*"pHs"-2.12-"pK2OP"-"pK3OP"))
Simulation type: assignment
+I38
Initial expression: exp("a_"*(3*"pHs"-2.12-2.12-"pK3OPOP"))
Simulation type: assignment
+I39
Initial expression: exp("a_"*(3*"pHs"-"pK1ADPGlu"-"pK2ADPGlu"-14))
Simulation type: assignment
+I3ADP
Initial expression: "I35"/"SUM5"
Simulation type: assignment
+I3ADP7
Initial expression: "I323"/"SUM23"
Simulation type: assignment
+I3ADPc
Initial expression: "I314"/"SUM14"
Simulation type: assignment
+I3PGA
Initial expression: "I31"/"SUM1"
Simulation type: assignment
+I3PGA7
Initial expression: "I319"/"SUM19"
Simulation type: assignment
+I3PGAc
Initial expression: "I310"/"SUM10"
Simulation type: assignment
+I41
Initial expression: exp("a_"*(4*"pHs"-"pK1PGA"-"pK2PGA"-"pK3PGA"-14))
Simulation type: assignment
+I410
Initial expression: exp("a_"*(4*"pHc"-"pK1PGA"-"pK2PGA"-"pK3PGA"-14))
Simulation type: assignment
+I411
Initial expression: exp("a_"*(4*"pHc"-2.12-2.12-"pK3BP"-"pK4BP"))
Simulation type: assignment
+I412
Initial expression: exp("a_"*(4*"pHc"-2.12-"pK2MP"-14-14))
Simulation type: assignment
+I413
Initial expression: exp("a_"*(4*"pHc"-1-2-"pK3ATP"-"pK4ATP"))
Simulation type: assignment
+I414
Initial expression: exp("a_"*(4*"pHc"-1-"pK2ADP"-"pK3ADP"-14))
Simulation type: assignment
+I415
Initial expression: exp("a_"*(4*"pHc"-"pK1AMP"-"pK2AMP"-14-14))
Simulation type: assignment
+I416
Initial expression: exp("a_"*(4*"pHc"-2.12-"pK2OP"-"pK3OP"-14))
Simulation type: assignment
+I417
Initial expression: exp("a_"*(4*"pHc"-2.12-2.12-"pK3OPOP"-"pK4OPOP"))
Simulation type: assignment
+I418
Initial expression: exp("a_"*(4*"pHc"-"pK1ADPGlu"-"pK2ADPGlu"-14-14))
Simulation type: assignment
+I419
Initial expression: exp("a_"*(4*7-"pK1PGA"-"pK2PGA"-"pK3PGA"-14))
Simulation type: assignment
+I42
Initial expression: exp("a_"*(4*"pHs"-2.12-2.12-"pK3BP"-"pK4BP"))
Simulation type: assignment
+I420
Initial expression: exp("a_"*(4*7-2.12-2.12-"pK3BP"-"pK4BP"))
Simulation type: assignment
+I421
Initial expression: exp("a_"*(4*7-2.12-"pK2MP"-14-14))
Simulation type: assignment
+I422
Initial expression: exp("a_"*(4*7-1-2-"pK3ATP"-"pK4ATP"))
Simulation type: assignment
+I423
Initial expression: exp("a_"*(4*7-1-"pK2ADP"-"pK3ADP"-14))
Simulation type: assignment
+I424
Initial expression: exp("a_"*(4*7-"pK1AMP"-"pK2AMP"-14-14))
Simulation type: assignment
+I425
Initial expression: exp("a_"*(4*7-2.12-"pK2OP"-"pK3OP"-14))
Simulation type: assignment
+I426
Initial expression: exp("a_"*(4*7-2.12-2.12-"pK3OPOP"-"pK4OPOP"))
Simulation type: assignment
+I427
Initial expression: exp("a_"*(4*7-"pK1ADPGlu"-"pK2ADPGlu"-14-14))
Simulation type: assignment
+I43
Initial expression: exp("a_"*(4*"pHs"-2.12-"pK2MP"-14-14))
Simulation type: assignment
+I44
Initial expression: exp("a_"*(4*"pHs"-1-2-"pK3ATP"-"pK4ATP"))
Simulation type: assignment
+I45
Initial expression: exp("a_"*(4*"pHs"-1-"pK2ADP"-"pK3ADP"-14))
Simulation type: assignment
+I46
Initial expression: exp("a_"*(4*"pHs"-"pK1AMP"-"pK2AMP"-14-14))
Simulation type: assignment
+I47
Initial expression: exp("a_"*(4*"pHs"-2.12-"pK2OP"-"pK3OP"-14))
Simulation type: assignment
+I48
Initial expression: exp("a_"*(4*"pHs"-2.12-2.12-"pK3OPOP"-"pK4OPOP"))
Simulation type: assignment
+I49
Initial expression: exp("a_"*(4*"pHs"-"pK1ADPGlu"-"pK2ADPGlu"-14-14))
Simulation type: assignment
+I4ATP
Initial expression: "I44"/"SUM4"
Simulation type: assignment
+I4ATP7
Initial expression: "I422"/"SUM22"
Simulation type: assignment
+I4ATPc
Initial expression: "I413"/"SUM13"
Simulation type: assignment
+I4BP
Initial expression: "I42"/"SUM2"
Simulation type: assignment
+I4BP7
Initial expression: "I420"/"SUM20"
Simulation type: assignment
+I4BPc
Initial expression: "I411"/"SUM11"
Simulation type: assignment
+I4OPOP
Initial expression: "I48"/"SUM8"
Simulation type: assignment
+I4OPOP7
Initial expression: "I426"/"SUM26"
Simulation type: assignment
+I4OPOPc
Initial expression: "I417"/"SUM17"
Simulation type: assignment
+j2d
Initial expression: 1/"Tau2"
Simulation type: assignment
+JFl
Initial expression: "PFD"*"Labs"*"Cchl2"*("Flm"-"Fl")/"Flm"
Simulation type: assignment
+k2
Initial expression: "Vm0"/"Km0CO2"/"E0T"
Simulation type: assignment
+k2d
Initial expression: "RC45"*"PQ"
Simulation type: assignment
+k2r
Initial expression: "RC45"*"PQ_"/"kE45"
Simulation type: assignment
+k4
Initial expression: 2*"Vm0"/"E0T"
Simulation type: assignment
+k5
Initial expression: "k4"
Simulation type: assignment
+k6
Initial expression: "k2"/"Ksp"
Simulation type: assignment
+k7
Initial expression: 0.5*"k4"
Simulation type: assignment
+kE0
Initial expression: exp(-1*"G0"/("R_"*"TKalv"))*("I3PGA7"*"I3PGA7")/"I4BP7"*"I4BP"/("I3PGA"*"I3PGA")
Simulation type: assignment
+kE1
Initial expression: exp(-1*"G1"/("R_"*"TKalv"))*("I2MP7"*"I3ADP7")/("I3PGA7"*"I4ATP7")
Simulation type: assignment
+kE10
Initial expression: exp(-1*"G10"/("R_"*"TKalv"))*("I3ADP7"*"I4BP7")/("I4ATP7"*"I2MP7")
Simulation type: assignment
+kE12
Initial expression: exp(-1*"G12"/("R_"*"TKalv"))*"I4ATP7"/("I3ADP7"*"I2OP7")*("I3ADP"*"I2OP")/"I4ATP"
Simulation type: assignment
+kE12d
Initial expression: "kE12"*exp("HPR"*log("HIft"/"HIfs"))
Simulation type: assignment
+kE13
Initial expression: exp(-1*"G13"/("R_"*"TKalv"))
Simulation type: assignment
+kE14
Initial expression: exp(-1*"G14"/("R_"*"TKalv"))*("I2AMP7"*"I4ATP7")/("I3ADP7"*"I3ADP7")*"I3ADP"*"I3ADP"/"I4ATP"/"I2AMP"
Simulation type: assignment
+kE141
Initial expression: exp(-1.1604e4*("EFd"-1*"ENADP")/"TKalv")
Simulation type: assignment
+kE142
Initial expression: exp(-1.1604e4*("EFd"-"ECytf")/"TKalv")
Simulation type: assignment
+kE15
Initial expression: exp(-1*"G15"/("R_"*"TKalv"))
Simulation type: assignment
+kE16
Initial expression: exp(-1*"G16"/("R_"*"TKalv"))
Simulation type: assignment
+kE17
Initial expression: exp(-1*"G17"/("R_"*"TKalv"))
Simulation type: assignment
+kE18
Initial expression: exp(-1*"G18"/("R_"*"TKalv"))
Simulation type: assignment
+kE19
Initial expression: exp(-1*"G19"/("R_"*"TKalv"))*("I4OPOP7"*"I2ADPGlu7")/("I4ATP7"*"I2MP7")*"I4ATP"*"I2MP"/"I4OPOP"/"I2ADPGlu"
Simulation type: assignment
+kE20
Initial expression: exp(-1*"G20"/("R_"*"TKalv"))*"I3ADP7"/"I2ADPGlu7"*"I2ADPGlu"/"I3ADP"
Simulation type: assignment
+kE21
Initial expression: exp(-1*"G21"/("R_"*"TKalv"))*("I2MP7"*"I3ADP7")/("I3PGA7"*"I4ATP7")
Simulation type: assignment
+kE23
Initial expression: exp(-1*"G23"/("R_"*"TKalv"))
Simulation type: assignment
+kE24
Initial expression: exp(-1*"G24"/("R_"*"TKalv"))*("I2MP7"*"I2OP7")/"I4BP7"*"I4BPc"/"I2MPc"/"I2OPc"
Simulation type: assignment
+kE25
Initial expression: exp(-1*"G25"/("R_"*"TKalv"))
Simulation type: assignment
+kE26
Initial expression: exp(-1*"G26"/("R_"*"TKalv"))
Simulation type: assignment
+kE27
Initial expression: exp(-1*"G27"/("R_"*"TKalv"))*("I2ADPGlu7"*1)/("I2MP7"*"I4ATP7")*"I2MPc"*"I4ATPc"/"I2ADPGluc"
Simulation type: assignment
+kE28
Initial expression: exp(-1*"G28"/("R_"*"TKalv"))*("I2MP7"*"I3ADP7")/("I2MP7"*"I2ADPGlu7")*"I2ADPGluc"/"I3ADPc"
Simulation type: assignment
+kE29
Initial expression: exp(-1*"G29"/("R_"*"TKalv"))*1/"I2MP7"*"I2MPc"
Simulation type: assignment
+kE3
Initial expression: exp(-1*"G3"/("R_"*"TKalv"))*"I4BP7"/("I2MP7"*"I2MP7")*("I2MP"*"I2MP")/"I4BP"
Simulation type: assignment
+kE30
Initial expression: exp(-1*"G30"/("R_"*"TKalv"))*("I2MP7"*"I4OPOP7")/("I4BP7"*"I2OP7")*"I4BPc"*"I2OPc"/"I2MPc"/"I4OPOPc"
Simulation type: assignment
+kE4
Initial expression: exp(-1*"G4"/("R_"*"TKalv"))*("I2MP7"*"I2OP7")/"I4BP7"*"I4BP"/"I2MP"/"I2OP"
Simulation type: assignment
+kE41
Initial expression: exp(-1.1604e4*("ECytf"-"EPC")/"TKalv")
Simulation type: assignment
+kE42
Initial expression: exp(-1.1604e4*("EPQ"-"ECytf")/"TKalv")
Simulation type: assignment
+kE42d
Initial expression: "kE42"*exp("HER"*log("HIfs"/"HIft"))
Simulation type: assignment
+kE43
Initial expression: exp(-1.1604e4*("EPC"-"EP700")/"TKalv")
Simulation type: assignment
+kE45
Initial expression: exp(-1.1604e4*("EQa"-"EPQ")/"TKalv")
Simulation type: assignment
+kE46
Initial expression: exp(-1.1604e4*("ENADP"-"EPQ")/"TKalv")
Simulation type: assignment
+kE48
Initial expression: exp(-1.1604e4*("EFeS"-1*"EFd")/"TKalv")
Simulation type: assignment
+kE5
Initial expression: exp(-1*"G5"/("R_"*"TKalv"))
Simulation type: assignment
+kE50
Initial expression: exp(-"a_"*"pK50")
Simulation type: assignment
+kE51
Initial expression: exp(-1.1604e4*("EFd"-1*"EFd")/"TKalv")
Simulation type: assignment
+kE52
Initial expression: exp(-1.1604e4*("EFd"-1*"Etrf")/"TKalv")
Simulation type: assignment
+kE53
Initial expression: exp(-1.1604e4*("Etrf"-1*"Eenf")/"TKalv")
Simulation type: assignment
+kE54
Initial expression: exp(-1.1604e4*("EFd"-1*"Etrm")/"TKalv")
Simulation type: assignment
+kE55
Initial expression: exp(-1.1604e4*("Etrm"-1*"Eenm")/"TKalv")
Simulation type: assignment
+kE6
Initial expression: exp(-1*"G6"/("R_"*"TKalv"))*"I4BP7"/("I2MP7"*"I2MP7")*("I2MP"*"I2MP")/"I4BP"
Simulation type: assignment
+kE61
Initial expression: exp(-1*"G61"/("R_"*"TKalv"))
Simulation type: assignment
+kE62
Initial expression: exp(-1*"G62"/("R_"*"TKalv"))
Simulation type: assignment
+kE63
Initial expression: exp(-1*"G63"/("R_"*"TKalv"))
Simulation type: assignment
+kE64
Initial expression: exp(-1*"G64"/("R_"*"TKalv"))
Simulation type: assignment
+kE66
Initial expression: exp(-1*"G66"/("R_"*"TKalv"))
Simulation type: assignment
+kE7
Initial expression: exp(-1*"G7"/("R_"*"TKalv"))*("I2MP7"*"I2OP7")/"I4BP7"*"I4BP"/"I2MP"/"I2OP"
Simulation type: assignment
+kE8
Initial expression: exp(-1*"G8"/("R_"*"TKalv"))
Simulation type: assignment
+kE9
Initial expression: exp(-1*"G9"/("R_"*"TKalv"))*("I4BP7"*"I3ADP7")/("I4ATP7"*"I2MP7")*"I4ATP"*"I2MP"/"I4BP"/"I3ADP"
Simulation type: assignment
+kf
Initial expression: "F0"/"Fmd"/(1-"F0"/"Fmd")
Simulation type: assignment
+ki
Initial expression: "kf"*("Fmd"/"Fmdi"-1)
Simulation type: assignment
+Ki19OPs
Initial expression: "Ki19OP"/"I2OP"
Simulation type: assignment
+Ki24F26BPc
Initial expression: "Ki24F26BP"/"I4BPc"
Simulation type: assignment
+Ki28OPc
Initial expression: "Ki28OP"/"I2OPc"
Simulation type: assignment
+Ki42
Initial expression: exp(-"a_"*"pK42")
Simulation type: assignment
+Km024FBPc
Initial expression: "Km024FBP"/"I4BPc"
Simulation type: assignment
+Km028F6Pc
Initial expression: "Km028F6P"/"I2MPc"
Simulation type: assignment
+Km10ADPs
Initial expression: "Km10ADP"/"I3ADP"
Simulation type: assignment
+Km10ATPs
Initial expression: "Km10ATP"/"I4ATP"
Simulation type: assignment
+Km10F6Ps
Initial expression: "Km10F6P"/"I2MP"
Simulation type: assignment
+Km10FBPs
Initial expression: "Km10FBP"/"I4BP"
Simulation type: assignment
+Km11OPc
Initial expression: "Km11OP"/"I2OPc"
Simulation type: assignment
+Km11OPs
Initial expression: "Km11OP"/"I2OP"
Simulation type: assignment
+Km11PGAc
Initial expression: "Km11PGA"/"I2PGAc"
Simulation type: assignment
+Km11PGAs
Initial expression: "Km11PGA"/"I2PGA"
Simulation type: assignment
+Km11T3Pc
Initial expression: "Km11T3P"/"I2MPc"
Simulation type: assignment
+Km11T3Ps
Initial expression: "Km11T3P"/"I2MP"
Simulation type: assignment
+Km12ADPs
Initial expression: "Km12ADP"/"I3ADP"
Simulation type: assignment
+Km12ATPs
Initial expression: "Km12ATP"/"I4ATP"
Simulation type: assignment
+Km12ATPSs
Initial expression: "kE12d"*"Km12ADPs"*"Km12OPs"
Simulation type: assignment
+Km12OPs
Initial expression: "Km12OP"/"I2OP"
Simulation type: assignment
+Km19ADPGlus
Initial expression: "Km19ADPGlu"/"I2ADPGlu"
Simulation type: assignment
+Km19ATPs
Initial expression: "Km19ATP"/"I4ATP"
Simulation type: assignment
+Km19G1Ps
Initial expression: "Km19G1P"/"I2MP"
Simulation type: assignment
+Km19OPOPs
Initial expression: "Km19OPOP"/"I4OPOP"
Simulation type: assignment
+Km1ADPs
Initial expression: "Km1ADP"/"I3ADP"
Simulation type: assignment
+Km1ATPs
Initial expression: "Km1ATP"/"I4ATP"
Simulation type: assignment
+Km1GAPs
Initial expression: "Km1GAP"/"I2MP"
Simulation type: assignment
+Km1OPs
Initial expression: "Km1OP"/"I2OP"
Simulation type: assignment
+Km1PGAs
Initial expression: "Km1PGA"/"I3PGA"
Simulation type: assignment
+Km20ADPGlus
Initial expression: "Km20ADPGlu"/"I2ADPGlu"
Simulation type: assignment
+Km20ADPs
Initial expression: "Km20ADP"/"I3ADP"
Simulation type: assignment
+Km21ADPc
Initial expression: "Km21ADP"/"I3ADPc"
Simulation type: assignment
+Km21ATPc
Initial expression: "Km21ATP"/"I4ATPc"
Simulation type: assignment
+Km21GAPc
Initial expression: "Km21GAP"/"I2MPc"
Simulation type: assignment
+Km21OPc
Initial expression: "Km21OP"/"I2OPc"
Simulation type: assignment
+Km21PGAc
Initial expression: "Km21PGA"/"I2PGAc"
Simulation type: assignment
+Km23DHAPc
Initial expression: "Km23DHAP"/"I2MPc"
Simulation type: assignment
+Km23FBPc
Initial expression: "Km23FBP"/"I4BPc"
Simulation type: assignment
+Km23GAPc
Initial expression: "Km23GAP"/"I2MPc"
Simulation type: assignment
+Km24F6Pc
Initial expression: "Km24F6P"/"I2MPc"
Simulation type: assignment
+Km24FBPc
Initial expression: "Km024FBPc"*(1+("F26BPc"/"Ki24F26BPc"))
Simulation type: assignment
+Km24OPc
Initial expression: "Km24OP"/"I2OPc"
Simulation type: assignment
+Km27G1Pc
Initial expression: "Km27G1P"/"I2MPc"
Simulation type: assignment
+Km27OPOPc
Initial expression: "Km27OPOP"/"I4OPOPc"
Simulation type: assignment
+Km27UDPGluc
Initial expression: "Km27UDPGlu"/"I2ADPGluc"
Simulation type: assignment
+Km27UTPc
Initial expression: "Km27UTP"/"I4ATPc"
Simulation type: assignment
+Km28F6Pc
Initial expression: "Km028F6Pc"*(1+"OPc"/"Kx28OPc")
Simulation type: assignment
+Km28SUCPc
Initial expression: "Km28SUCP"/"I2MPc"
Simulation type: assignment
+Km28UDPc
Initial expression: "Km28UDP"/"I3ADPc"
Simulation type: assignment
+Km28UDPGluc
Initial expression: "Km28UDPGlu"/"I2ADPGluc"
Simulation type: assignment
+Km29OPc
Initial expression: "Km29OP"/"I2OPc"
Simulation type: assignment
+Km29SUCc
Initial expression: "Km29SUC"
Simulation type: assignment
+Km29SUCPc
Initial expression: "Km29SUCP"/"I2MPc"
Simulation type: assignment
+Km3DHAPs
Initial expression: "Km3DHAP"/"I2MP"
Simulation type: assignment
+Km3FBPs
Initial expression: "Km3FBP"/"I4BP"
Simulation type: assignment
+Km3GAPs
Initial expression: "Km3GAP"/"I2MP"
Simulation type: assignment
+Km4F6Ps
Initial expression: "Km4F6P"/"I2MP"
Simulation type: assignment
+Km4FBPs
Initial expression: "Km4FBP"/"I4BP"
Simulation type: assignment
+Km4OPs
Initial expression: "Km4OP"/"I2OP"
Simulation type: assignment
+Km5GAPs
Initial expression: "Km5GAP"/"I2MP"
Simulation type: assignment
+Km5P5Ps
Initial expression: "Km5P5P"/"I2MP"
Simulation type: assignment
+Km6DHAPs
Initial expression: "Km6DHAP"/"I2MP"
Simulation type: assignment
+Km6E4Ps
Initial expression: "Km6E4P"/"I2MP"
Simulation type: assignment
+Km6SBPs
Initial expression: "Km6SBP"/"I4BP"
Simulation type: assignment
+Km7OPs
Initial expression: "Km7OP"/"I2OP"
Simulation type: assignment
+Km7S7Ps
Initial expression: "Km7S7P"/"I2MP"
Simulation type: assignment
+Km7SBPs
Initial expression: "Km7SBP"/"I4BP"
Simulation type: assignment
+Km8F6Ps
Initial expression: "Km8F6P"/"I2MP"
Simulation type: assignment
+Km8GAPs
Initial expression: "Km8GAP"/"I2MP"
Simulation type: assignment
+Km8P5Ps
Initial expression: "Km8P5P"/"I2MP"
Simulation type: assignment
+Km8S7Ps
Initial expression: "Km8S7P"/"I2MP"
Simulation type: assignment
+Km9ADPs
Initial expression: "Km9ADP"/"I3ADP"
Simulation type: assignment
+Km9ATPs
Initial expression: "Km9ATP"/"I4ATP"
Simulation type: assignment
+Km9Ru5Ps
Initial expression: "Km9Ru5P"/"I2MP"
Simulation type: assignment
+Km9RuBPs
Initial expression: "Km9RuBP"/"I4BP"
Simulation type: assignment
+kN
Initial expression: "kf"*("Fmd"/"Fm"-1)/0.9
Simulation type: assignment
+Kx28OPc
Initial expression: "Kx28OP"/"I2OPc"
Simulation type: assignment
+MAL
Initial expression: "MALc"
Simulation type: assignment
+n2d
Initial expression: "ERPS2"
Simulation type: assignment
+NAD
Initial expression: "NADT"-"NADH"
Simulation type: assignment
+NADP
Initial expression: "NADPT"-"NADPH"
Simulation type: assignment
+NADPT
Initial expression: "NADPTs"/"Vst"
Simulation type: assignment
+NADT
Initial expression: "NADTs"/"Vcy"
Simulation type: assignment
+Oaw
Initial expression: "Oa"*"Patm"/"Rgas"/"TKalv"/1000*"Bo"
Simulation type: assignment
+OP
Initial value: 0.0026756840909091
Initial expression: OPT-2.0*(EPP+EPG+RuBP+OPOP+FBP+SBP+ATP)-(EP+PGA+T3P+HeP+E4P+S7P+P5P)-(ADP+ADPGlu) = 0.0026756840909091
Simulation type: assignment
+OPATP
Initial expression: "OPT"-2.0*("EPP"+"EPG"+"RuBP"+"OPOP"+"FBP"+"SBP"+"ATP")-("EP"+"EOP"+"PGA"+"T3P"+"HeP"+"E4P"+"S7P"+"P5P")-("ADP"+"ADPGlu")
Simulation type: assignment
+OPc
Initial expression: "OPTc"-2.0*("FBPc"+"OPOPc"+"ATPc"+"UTPc")-("PGAc"+"T3Pc"+"HePc"+"SuCPc"+"ADPc"+"UDPc"+"UDPGluc")
Simulation type: assignment
+OPT
Initial expression: "OPTs"/"Vst"
Simulation type: assignment
+OPTc
Initial expression: "OPTcs"/"Vcy"
Simulation type: assignment
+Owc
Initial expression: "Oaw"
Simulation type: assignment
+OXA
Initial expression: "OXAc"
Simulation type: assignment
+P700
Initial expression: "PS1T"-"P700_"
Simulation type: assignment
+P700_
Initial expression: (-1*"par8"-1*sqrt("par8"*"par8"-4*"par7"*"par9"))/(2*"par7")
Simulation type: assignment
+par10
Initial expression: "Vme"*("kE48"-1)
Simulation type: assignment
+par11
Initial expression: ("kE48"*"FdT"*"Vst"+"FeST"*"Vme"-"PS1A_"*("kE48"-1))
Simulation type: assignment
+par12
Initial expression: -"FeST"*"PS1A_"
Simulation type: assignment
+par4
Initial expression: "kE41"-1
Simulation type: assignment
+par5
Initial expression: -("kE41"*("CytPCf_"+"PCfT")+"CytfT"-"CytPCf_")
Simulation type: assignment
+par6
Initial expression: "kE41"*"CytPCf_"*"PCfT"
Simulation type: assignment
+par7
Initial expression: "kE43"-1
Simulation type: assignment
+par8
Initial expression: -("kE43"*("PCpP700_"+"PS1T")+"PCpT"-"PCpP700_")
Simulation type: assignment
+par9
Initial expression: "kE43"*"PCpP700_"*"PS1T"
Simulation type: assignment
+PCf
Initial expression: "PCfT"-"PCf_"
Simulation type: assignment
+PCfT
Initial expression: "PCT"-"PCpT"
Simulation type: assignment
+PCf_
Initial expression: (-1*"par5"-1*sqrt("par5"*"par5"-4*"par4"*"par6"))/(2*"par4")
Simulation type: assignment
+PCp
Initial expression: "PCpT"-"PCp_"
Simulation type: assignment
+PCpP700
Initial expression: "PCpP700T"-"PCpP700_"
Simulation type: assignment
+PCpP700T
Initial expression: "PCpT"+"PS1T"
Simulation type: assignment
+PCp_
Initial expression: "PCpP700_"-"P700_"
Simulation type: assignment
+PCT
Initial expression: "PCTs"/"Vme"
Simulation type: assignment
+PQ
Initial expression: "PQT"-"PQ_"
Simulation type: assignment
+PQT
Initial expression: "PQTs"/"Vme"
Simulation type: assignment
+PS1T
Initial expression: "PS1Ts"/"Vme"
Simulation type: assignment
+PS2A
Initial expression: "PS2T"-"PS2A_"
Simulation type: assignment
+PS2A_
Initial expression: ("A2"+"C2")
Simulation type: assignment
+PS2T
Initial expression: "PS2Ts"/"Vme"
Simulation type: assignment
+PSU1
Initial expression: "Chl1"/"PS1Ts"
Simulation type: assignment
+PSU2
Initial expression: "Chl2"/"PS2Ts"
Simulation type: assignment
+QH
Initial expression: ("HIft"/"kE50")*("HIft"/"kE50")/(1+("HIft"/"kE50")*("HIft"/"kE50"))
Simulation type: assignment
+RFd
Initial expression: "Fd"/"FdT"
Simulation type: assignment
+RFd_
Initial expression: "Fd_"/"FdT"
Simulation type: assignment
+Ri5P
Initial expression: "P5P"/(1+"kE17"+("kE17"/"kE18"))
Simulation type: assignment
+Ru5P
Initial expression: "P5P"*"kE17"/(1+"kE17"+("kE17"/"kE18"))
Simulation type: assignment
+SUM1
Initial expression: 1+"I11"+"I21"+"I31"+"I41"
Simulation type: assignment
+SUM10
Initial expression: 1+"I110"+"I210"+"I310"+"I410"
Simulation type: assignment
+SUM11
Initial expression: 1+"I111"+"I211"+"I311"+"I411"
Simulation type: assignment
+SUM12
Initial expression: 1+"I112"+"I212"+"I312"+"I412"
Simulation type: assignment
+SUM13
Initial expression: 1+"I113"+"I213"+"I313"+"I413"
Simulation type: assignment
+SUM14
Initial expression: 1+"I114"+"I214"+"I314"+"I414"
Simulation type: assignment
+SUM15
Initial expression: 1+"I115"+"I215"+"I315"+"I415"
Simulation type: assignment
+SUM16
Initial expression: 1+"I116"+"I216"+"I316"+"I416"
Simulation type: assignment
+SUM17
Initial expression: 1+"I117"+"I217"+"I317"+"I417"
Simulation type: assignment
+SUM18
Initial expression: 1+"I118"+"I218"+"I318"+"I418"
Simulation type: assignment
+SUM19
Initial expression: 1+"I119"+"I219"+"I319"+"I419"
Simulation type: assignment
+SUM2
Initial expression: 1+"I12"+"I22"+"I32"+"I42"
Simulation type: assignment
+SUM20
Initial expression: 1+"I120"+"I220"+"I320"+"I420"
Simulation type: assignment
+SUM21
Initial expression: 1+"I121"+"I221"+"I321"+"I421"
Simulation type: assignment
+SUM22
Initial expression: 1+"I122"+"I222"+"I322"+"I422"
Simulation type: assignment
+SUM23
Initial expression: 1+"I123"+"I223"+"I323"+"I423"
Simulation type: assignment
+SUM24
Initial expression: 1+"I124"+"I224"+"I324"+"I424"
Simulation type: assignment
+SUM25
Initial expression: 1+"I125"+"I225"+"I325"+"I425"
Simulation type: assignment
+SUM26
Initial expression: 1+"I126"+"I226"+"I326"+"I426"
Simulation type: assignment
+SUM27
Initial expression: 1+"I127"+"I227"+"I327"+"I427"
Simulation type: assignment
+SUM3
Initial expression: 1+"I13"+"I23"+"I33"+"I43"
Simulation type: assignment
+SUM4
Initial expression: 1+"I14"+"I24"+"I34"+"I44"
Simulation type: assignment
+SUM5
Initial expression: 1+"I15"+"I25"+"I35"+"I45"
Simulation type: assignment
+SUM6
Initial expression: 1+"I16"+"I26"+"I36"+"I46"
Simulation type: assignment
+SUM7
Initial expression: 1+"I17"+"I27"+"I37"+"I47"
Simulation type: assignment
+SUM8
Initial expression: 1+"I18"+"I28"+"I38"+"I48"
Simulation type: assignment
+SUM9
Initial expression: 1+"I19"+"I29"+"I39"+"I49"
Simulation type: assignment
+T810
Initial expression: (0.33*("PCf_"+"PCp_")+"P700_"+0.2*"Fd_")/(0.33*"PCT"+"PS1T")
Simulation type: assignment
+T950
Initial expression: (0.11*("PCf_"+"PCp_")+0.077*"P700_")/(0.11*"PCT"+0.077*"PS1T")
Simulation type: assignment
+TKalv
Initial expression: "Tleaf"+273
Simulation type: assignment
+TRf
Initial expression: "TRfT"-"TRf_"
Simulation type: assignment
+TRm
Initial expression: "TRmT"-"TRm_"
Simulation type: assignment
+UDPc
Initial expression: "UDTc"-"UTPc"
Simulation type: assignment
+UDTc
Initial expression: "UDTcs"/"Vcy"
Simulation type: assignment
+UTPc
Initial expression: "ATPc"/"ADTc"*"UDTc"
Simulation type: assignment
+V1
Initial expression: "ACTf"*"Vm1"*("PGA"*"ATP"-"GAP"*"ADP"*"OP"/("kE1"*"HIrs"*"NADPH"/"NADP"))/"Km1PGAs"/"Km1ATPs"/"DenPGA"
Simulation type: assignment
+V10
Initial expression: "Vm10"
Simulation type: assignment
+V12
Initial expression: "Vm12"*("ADP"*"OPATP"-"ATP"/"kE12d")/"Km12ADPs"/"Km12OPs"/"Den12"
Simulation type: assignment
+V141
Initial expression: "Vm141"*("Fd_"*"NADP"-"NADPH"*"Fd"/"kE141")/"Km141Fd_"/"Km141NADP"/(1+"Fd_"/"Km141Fd_"+"NADP"/"Km141NADP"+"NADPH"/"Km141NADPH"+"Fd"/"Km141Fd"+"Fd_"/"Km141Fd"*"NADP"/"Km141NADP"+"NADPH"/"Km141NADPH"*"Fd"/"Km141Fd")
Simulation type: assignment
+V142
Initial expression: "Vm142"*("FeS_"*"CytF"-"CytF_"*"FeS"/"kE142")/"Km142Fd_"/"Km142Cytf"/(1+"Fd_"/"Km142Fd_"+"CytF"/"Km142Cytf"+"CytF_"/"Km142Cytf_"+"Fd"/"Km142Fd"+"Fd_"/"Km142Fd_"*"CytF"/"Km142Cytf"+"CytF_"/"Km142Cytf_"*"Fd"/"Km142Fd")
Simulation type: assignment
+V146
Initial expression: "Vm146"*"Owc"/("Km146Owc"+"Owc")*"CytF_"/"CytfT"
Simulation type: assignment
+V19
Initial expression: "Vm19a"*("ATP"*"G1P"-"ADPGlu"*"OPOP"/"kE19")/"Km19ATPs"/"Km19G1Ps"/(1+"ATP"/"Km19ATPs"+"G1P"/"Km19G1Ps"+"ATP"*"G1P"/"Km19ATPs"/"Km19G1Ps"+"ADPGlu"/"Km19ADPGlus"+"OPOP"/"Km19OPOPs"+"ADPGlu"*"OPOP"/"Km19ADPGlus"/"Km19OPOPs")
Simulation type: assignment
+V20
Initial expression: "Vm20"*("ADPGlu"-"ADP"/"kE20")/"Km20ADPGlus"/(1+"ADPGlu"/"Km20ADPGlus"+"ADP"/"Km20ADPs")
Simulation type: assignment
+V23
Initial expression: "Vm23"*("GAPc"*"DHAPc"-"FBPc"/"kE23")/"Km23GAPc"/"Km23DHAPc"/(1+"GAPc"/"Km23GAPc"+"DHAPc"/"Km23DHAPc"+"FBPc"/"Km23FBPc"+"GAPc"*"DHAPc"/"Km23GAPc"/"Km23DHAPc")
Simulation type: assignment
+V24
Initial expression: "Vm24"*"FBPc"*("FBPc"-"F6Pc"*"OPc"/"kE24")/("Km24FBPc"*"Km24FBPc")/(1+("FBPc"/"Km24FBPc")*("FBPc"/"Km24FBPc")+"F6Pc"/"Km24F6Pc"+"F6Pc"*"OPc"/"Km24F6Pc"/"Km24OPc"+"OPc"/"Km24OPc")
Simulation type: assignment
+V27
Initial expression: "Vm27"*("UTPc"*"G1Pc"-"UDPGluc"*"OPOPc"/"kE27")/"Km27UTPc"/"Km27G1Pc"/(1+"UTPc"/"Km27UTPc"+"G1Pc"/"Km27G1Pc"+"UTPc"*"G1Pc"/"Km27UTPc"/"Km27G1Pc"+"UDPGluc"/"Km27UDPGluc"+"OPOPc"/"Km27OPOPc"+"UDPGluc"*"OPOPc"/"Km27UDPGluc"/"Km27OPOPc")
Simulation type: assignment
+V28
Initial expression: "Vm28"*("F6Pc")*("F6Pc"*"UDPGluc"-"UDPc"*"SuCPc"*"HIrc"/"kE28")/("Km28F6Pc"*"Km28F6Pc")/"Km28UDPGluc"/"Den"
Simulation type: assignment
+V29
Initial expression: "Vm29"*("SuCPc"-"SuCc"*"OPc"/"kE29")/"Km29SUCPc"/(1+"SuCPc"/"Km29SUCPc"+"SuCc"/"Km29SUCc"+"SuCc"*"OPc"/"Km29SUCc"/"Km29OPc")
Simulation type: assignment
+V3
Initial expression: "Vm3"*("GAP"*"DHAP"-"FBP"/"kE3")/"Km3GAPs"/"Km3DHAPs"/"DenGAP"
Simulation type: assignment
+V31
Initial expression: "Vm31"*"F6Pc"/"Km31F6P"*(1+("OPc"/"Km31OP"))/(1+(("T3Pc"+"PGAc")/"Ki31T3P"))
Simulation type: assignment
+V32
Initial expression: "Vm32"*"F26BPc"/"Km32F26BP"*(1+(("T3Pc"+"PGAc")/"Km32T3P"))/(1+("OPc"/"Ki32OP")+"HePc"/"Ki32HeP")
Simulation type: assignment
+V4
Initial expression: "ACTf"*"Vm4"*("FBP"-"F6P"*"OP"/"kE4")/"Km4FBPs"/"DenFBP"
Simulation type: assignment
+V40e
Initial expression: "RC40"*("PCf_"-"PCp_")
Simulation type: assignment
+V40pc
Initial expression: "RC40"*(("PCf_"-"PCp_")-("PCp"-"PCf"))
Simulation type: assignment
+V42
Initial expression: "Vm42"*("PQ_"*"CytF"-"CytF_"*"PQ"/"kE42d")/"Km42PQ_"/"CytfT"/(1+"PQ_"/"Km42PQ_")
Simulation type: assignment
+V44
Initial expression: "RC44"*("HIft"-"HIfs")
Simulation type: assignment
+V45
Initial expression: "RC45"*("PS2A_"*"PQ"-"PS2A"*"PQ_"/"kE45")
Simulation type: assignment
+V46
Initial expression: "Vm46"*("NADPH"*"PQ"-"NADP"*"PQ_"/"kE46")/"Km46NADPH"/"Km46PQ"/(1+"NADPH"/"Km46NADPH"+"PQ"/"Km46PQ"+"NADP"/"Km46NADP"+"PQ_"/"Km46PQ_"+"NADPH"/"Km46NADPH"*"PQ"/"Km46PQ"+"NADP"/"Km46NADP"*"NADPH"/"Km46NADPH")
Simulation type: assignment
+V49
Initial expression: "RC49"*"Fd_"*"Owc"/0.000267
Simulation type: assignment
+V5
Initial expression: "Vm_5"*("F6P"*"GAP"*"kE5"-"E4P"*"Xu5P")/"Km8P5Ps"/"Km5P5Ps"/"Den58"
Simulation type: assignment
+V6
Initial expression: "Vm6"*("E4P"*"DHAP"-"SBP"/"kE6")/"Km6E4Ps"/"Km6DHAPs"/"DenE4P"
Simulation type: assignment
+V60
Initial expression: "Vm60"*"ATP"/("Km60ATP"+"ATP")
Simulation type: assignment
+V61
Initial expression: "Vm61"*("PGAc"-"P2GAc"/"kE61")/"Km61P3GA"/(1+"PGAc"/"Km61P3GA"+"P2GAc"/"Km61P2GA")
Simulation type: assignment
+V62
Initial expression: "Vm62"*("P2GAc"-"PEPc"/"kE62")/"Km62P2GA"/(1+"P2GAc"/"Km62P2GA"+"PEPc"/"Km62PEP")
Simulation type: assignment
+V63
Initial expression: "Vm63"*("PEPc"*"Cc"-"OXAc"/"kE63")/"Km63PEP"/"Km63CO2"/(1+"PEPc"/"Km63PEP"+"Cc"/"Km63CO2"+"OXAc"/"Km63OXA"+"PEPc"/"Km63PEP"*"Cc"/"Km63CO2")
Simulation type: assignment
+V64
Initial expression: "ACTm"*"Vm64"*("NADPH"*"OXA"-"NADP"*"MAL"/"kE64")/"DenMAL"
Simulation type: assignment
+V65
Initial expression: "Vm65"*"Fd_"*"PYRc"/"Km65Fd_"/"Km65PYR"/(1+"Fd_"/"Km65Fd_"+"PYRc"/"Km65PYR"+"Fd_"/"Km65Fd_"*"PYRc"/"Km65PYR")
Simulation type: assignment
+V66
Initial expression: "Vm66"*("PEPc"-"PYRc"/"kE66")/"Km66PEP"/(1+"PEPc"/"Km66PEP"+"PYRc"/"Km66PYR")
Simulation type: assignment
+V7
Initial expression: "ACTf"*"Vm7"*("SBP"-"S7P"*"OP"/"kE7")/"Km7SBPs"/(1+"SBP"/"Km7SBPs"+"S7P"/"Km7S7Ps"+"OP"/"Km7OPs"+"S7P"*"OP"/"Km7S7Ps"/"Km7OPs")
Simulation type: assignment
+V8
Initial expression: "Vm_8"*("S7P"*"GAP"*"kE8"-"Xu5P"*"Ri5P")/"Km8P5Ps"/"Km5P5Ps"/"Den58"
Simulation type: assignment
+V9
Initial expression: "ACTf"*"Vm9"*("Ru5P"*"ATP"-"RuBP"*"ADP"/"kE9")/"Km9Ru5Ps"/"Km9ATPs"/(1+"Ru5P"/"Km9Ru5Ps"+"ATP"/"Km9ATPs"+"RuBP"/"Km9RuBPs"+"ADP"/"Km9ADPs"+"Ru5P"*"ATP"/"Km9Ru5Ps"/"Km9ATPs"+"RuBP"*"ADP"/"Km9RuBPs"/"Km9ADPs")
Simulation type: assignment
+Vc
Initial expression: "k2"*"Cc"*"ER"
Simulation type: assignment
+Vcy
Initial expression: "Ccy"*"Vme"
Simulation type: assignment
+Vlu
Initial expression: "Clu"*"Vme"
Simulation type: assignment
+Vm0
Initial expression: "Vms0"/"Vst"
Simulation type: assignment
+Vm1
Initial expression: "Vms1"/"Vst"
Simulation type: assignment
+Vm10
Initial expression: "Vms10"/"Vst"
Simulation type: assignment
+Vm11
Initial expression: "Vms11"/"Vst"
Simulation type: assignment
+Vm12
Initial expression: "Vms12"/"Vst"
Simulation type: assignment
+Vm141
Initial expression: "Vms141"/"Vst"
Simulation type: assignment
+Vm142
Initial expression: "Vms142"/"Vst"
Simulation type: assignment
+Vm146
Initial expression: "Vms146"/"Vme"
Simulation type: assignment
+Vm19
Initial expression: "Vms19"/"Vst"
Simulation type: assignment
+Vm19a
Initial expression: "Vm19"*("PGA"/"OP")*("PGA"/"OP")
Simulation type: assignment
+Vm20
Initial expression: "Vms20"/"Vcy"
Simulation type: assignment
+Vm21
Initial expression: "Vms21"/"Vcy"
Simulation type: assignment
+Vm23
Initial expression: "Vms23"/"Vcy"
Simulation type: assignment
+Vm24
Initial expression: "Vms24"/"Vcy"
Simulation type: assignment
+Vm27
Initial expression: "Vms27"/"Vcy"
Simulation type: assignment
+Vm28
Initial expression: "Vms28"/"Vcy"
Simulation type: assignment
+Vm29
Initial expression: "Vms29"/"Vcy"
Simulation type: assignment
+Vm3
Initial expression: "Vms3"/"Vst"
Simulation type: assignment
+Vm31
Initial expression: "Vms31"/"Vcy"
Simulation type: assignment
+Vm32
Initial expression: "Vms32"/"Vcy"
Simulation type: assignment
+Vm4
Initial expression: "Vms4"/"Vst"
Simulation type: assignment
+Vm42
Initial expression: "Vms42"/"Vme"
Simulation type: assignment
+Vm46
Initial expression: "Vms46"/"Vst"
Simulation type: assignment
+Vm6
Initial expression: "Vms6"/"Vst"
Simulation type: assignment
+Vm60
Initial expression: "Vms60"/"Vst"
Simulation type: assignment
+Vm61
Initial expression: "Vms61"/"Vcy"
Simulation type: assignment
+Vm62
Initial expression: "Vms62"/"Vcy"
Simulation type: assignment
+Vm63
Initial expression: "Vms63"/"Vcy"
Simulation type: assignment
+Vm64
Initial expression: "Vms64"/"Vst"
Simulation type: assignment
+Vm65
Initial expression: "Vms65"/"Vcy"
Simulation type: assignment
+Vm66
Initial expression: "Vms66"/"Vcy"
Simulation type: assignment
+Vm7
Initial expression: "Vms7"/"Vst"
Simulation type: assignment
+Vm9
Initial expression: "Vms9"/"Vst"
Simulation type: assignment
+Vme
Initial expression: "Cvme"*"Chl"
Simulation type: assignment
+Vm_5
Initial expression: "Vms_5"/"Vst"
Simulation type: assignment
+Vm_8
Initial expression: "Vms_8"/"Vst"
Simulation type: assignment
+Vo
Initial expression: "k6"*"Owc"*"ER"
Simulation type: assignment
+VOPin
Initial expression: "AI"*"OPc"/"Km11OPc"-"AII"*"OP"/"Km11OPs"
Simulation type: assignment
+VPGAout
Initial expression: "PGA"*"AII"/"Km11PGAs"-"PGAc"*"AI"/"Km11PGAc"
Simulation type: assignment
+Vst
Initial expression: "Cst"*"Vme"
Simulation type: assignment
+VT3Pout
Initial expression: "T3P"*"AII"/"Km11T3Ps"-"T3Pc"*"AI"/"Km11T3Pc"
Simulation type: assignment
+Xu5P
Initial expression: "P5P"*"kE17"/"kE18"/(1+"kE17"+("kE17"/"kE18"))
Simulation type: assignment
+Initial conditions
Name Value
ADPGlu 0.000006295
ATP 0.0004245
CytPCf_ 0.000148
E4P 0.00004173
ENf_ 0.0009053
ENm_ 0.0008658
EOP 0.0002966
EP 0.0007045
EPG 0.0003206
EPP 0.0002711
ER 0.001201
F26BPc 0.00001121
FBP 0.0001239
FBPc 0.0006256
HeP 0.002901
HePc 0.003532
Hlt 0.01034
NADPH 0.0002435
Nq 0.9552
OPD
OXAc 0.0001544
P2GAc 0.0003424
P5P 0.0002352
PCpP700_ 0.0002193
PCpT 0.0008107
PEPc 0.0001701
PGA 0.002463
PGAc 0.002267
PQ_ 0.006058
PS1A_ 0.000007582
PYRc 0.0009215
RuBP 0.007723
S7P 0.0002698
SBP 0.0000655
SuCPc 0.00004772
T3P 0.001109
T3Pc 0.001723
TRf_ 0.0008133
TRm_ 0.0008133
UDPGluc 0.0007056
+Parameters

Constant quantities

Name Value
Achl 36200
ADTcs 0.00002
ADTs 0.00001
Arev 0
ATPc 0.0009652
a_ 2.3025851
BFHt 0.003
BF_t 0.04
Ca 0.00034
Cchl1 0.5
Cchl2 0.47
Ccy 8
Chl 0.00055
Clu 1
Cst 8
Cvme 4
CytfTs 0.0000015
ECytf 0.27
Eenf -0.32
Eenm -0.33
EFd -0.38
EFeS -0.4
ENAD -0.34
ENADP -0.34
ENfT 0.001
ENmT 0.001
EP700 0.365
EPC 0.295
EPQ 0
EQa -0.05
Etrf -0.34
Etrm -0.34
e_ 1.6022e-19
F0 0.16
FarRed 0
FdTs 0.000015
Fm 0.25
Fmd 1
Fmdi 0.8
G0 -8
G1 3
G10 -5
G12 7.3
G13 -1.8
G14 -0.42
G15 0.4
G16 1.7
G17 0.64
G18 -0.13
G19 1.6
G20 -8
G21 1.8
G23 -5.5
G24 -4
G25 0.4
G26 1.7
G27 0.71
G28 -0.29
G29 -3.3
G3 -5.5
G30 -3
G4 -4
G5 1.4
G6 -5.5
G61 1.1
G62 0.4
G63 -7.63
G64 -5
G66 -1
G7 -4
G8 0.1
G9 -5.2
HER 2
HPR 4
j2r 0
k1 50000
Ka19PGA 0.012
kA4 3
kA7 3
kA9 5
KBt 0.000001
kcat 3
Ki19OP 0.003
Ki24F26BP 0.000001
Ki28OP 0.0015
Ki31T3P 0.0015
Ki32HeP 0.0001
Ki32OP 0.001
Km024FBP 0.00002
Km028F6P 0.00026
Km0CO2 0.00001
Km10ADP 0.001
Km10ATP 0.0001
Km10F6P 0.0003
Km10FBP 0.001
Km11OP 0.00009
Km11PGA 0.00009
Km11T3P 0.00009
Km12ADP 0.0003
Km12ATP 0.000001447
Km12OP 0.0003
Km141Fd 0.001
Km141Fd_ 0.0001
Km141NADP 0.001
Km141NADPH 0.0005
Km142Cytf 0.001
Km142Cytf_ 0.001
Km142Fd 0.001
Km142Fd_ 0.0002
Km146Owc 0.000003
Km19ADPGlu 0.0005
Km19ATP 0.0001
Km19G1P 0.001
Km19OPOP 0.0008
Km1ADP 0.0005
Km1ATP 0.0003
Km1GAP 0.00026
Km1OP 0.0026
Km1PGA 0.001
Km20ADP 0.0006
Km20ADPGlu 0.0002
Km21ADP 0.0005
Km21ATP 0.0003
Km21GAP 0.00026
Km21OP 0.0026
Km21PGA 0.001
Km23DHAP 0.00035
Km23FBP 0.000019
Km23GAP 0.00026
Km24F6P 0.000061
Km24OP 0.0017
Km27G1P 0.00003
Km27OPOP 0.00003
Km27UDPGlu 0.00013
Km27UTP 0.0002
Km28SUCP 0.00035
Km28UDP 0.00058
Km28UDPGlu 0.0001
Km29OP 0.002
Km29SUC 0.01
Km29SUCP 0.00005
Km31F6P 0.001
Km31OP 0.001
Km32F26BP 0.000000001
Km32T3P 0.002
Km3DHAP 0.00035
Km3FBP 0.000019
Km3GAP 0.00026
Km42Cytf 0.0001
Km42Cytf_ 0.0005
Km42PQ 0.002
Km42PQ_ 0.001
km45NADP_del 0.000001
Km46NADP 0.000001
Km46NADPH 0.000001
Km46PQ 0.000001
Km46PQ_ 0.000001
Km4F6P 0.000061
Km4FBP 0.000031
Km4OP 0.0017
Km5GAP 0.00026
Km5P5P 0.00059
Km60ATP 0.000005
Km61P2GA 0.0001
Km61P3GA 0.001
Km62P2GA 0.0003
Km62PEP 0.0001
Km63CO2 0.000002
Km63OXA 0.0005
Km63PEP 0.0001
Km64MAL 0.001
Km64NADP 0.001
Km64NADPH 0.00015
Km64OXA 0.00005
Km65Fd_ 0.003
Km65PYR 0.00001
Km66PEP 0.0001
Km66PYR 0.0001
Km6DHAP 0.00035
Km6E4P 0.00017
Km6SBP 0.000019
Km7OP 0.0064
Km7S7P 0.000015
Km7SBP 0.000012
Km8F6P 0.00052
Km8GAP 0.000087
Km8P5P 0.00011
Km8S7P 0.00017
Km9ADP 0.000086
Km9ATP 0.0005
Km9Ru5P 0.000035
Km9RuBP 0.000094
Ksp 99
Kx28OP 0.0084
k_ 1.3807e-23
k_1 0.9
k_2 0
k_4 0
k_5 70000
k_6 0
k_7 0
Labs 0.87
MALc 0.0005
n2r 700
Na 6.022e23
NADH 0.0001
NADPTs 0.00002
NADTs 0.00002
Oa 0.21
OPOP 0.000001
OPOPc 0.00004
OPTcs 0.0003
OPTs 0.0005
Patm 96440
PCTs 0.000003567
PFD 0.002276
pHc 7.8
pHs 8.05
pK1ADPGlu 3.93
pK1AMP 3.74
pK1PGA 1.42
pK2ADP 3.93
pK2ADPGlu 6.83
pK2AMP 6.45
pK2MP 6.65
pK2OP 6.78
pK2PGA 3.42
pK3ADP 6.83
pK3ATP 4.06
pK3BP 6.02
pK3OP 12.4
pK3OPOP 6.7
pK3PGA 7.1
pK42 5.2
pK4ATP 7.06
pK4BP 6.82
pK4OPOP 9.4
pK50 5.65
PQTs 0.000015
PS1Ts 0.00000155
PS2Ts 0.00000201
RC40 1000
RC44 0
RC45 1000000000
RC49 0.01
RC50 0.1
RC52 1000
RC53 1000
RC54 1000
RC55 1000
Rgas 8.3144
Rgw 0.38
Rmd 0.015
Rmit 0
R_ 0.0019865
SLP 1
SuCc 0.05
Tau2 0.000615
Tleaf 22.5
TRfT 0.001
TRmT 0.001
UDTcs 0.00001
Vms0 0.000148
Vms1 0.0003
Vms10 0
Vms11 0.001
Vms12 0.0005
Vms141 0.0004
Vms142 0.001
Vms146 0
Vms19 0.00002
Vms20 0.00005
Vms21 0.000003613
Vms23 0.0001
Vms24 0.00002
Vms27 0.00007226
Vms28 0.0000013
Vms29 0.00001807
Vms3 0.0004
Vms31 0.000000001806
Vms32 0.000000000003613
Vms4 0.0002
Vms42 0.0003
Vms46 0
Vms6 0.0002
Vms60 0
Vms61 0.0001
Vms62 0.0001
Vms63 0.0000015
Vms64 0.000001
Vms65 0.00001
Vms66 0.0001
Vms7 0.0001
Vms9 0.01
Vms_5 0.003
Vms_8 0.001445
WDC 0.00000000000001

Assigned quantities

Name Value
A2
Ac
ACTf
ACTm
ADP
ADPc
ADT
ADTc
AI
AII
B2
Bc
Bo
C2
Caw
Cc
Chl1
Chl2
CytF
CytfT
CytF_
CytPCf
CytPCfT
D2
Den
Den11
Den12
Den58
DenAI
DenAII
DenE4P
DenFBP
DenGAP
DenMAL
DenPGA
DHAP
DHAPc
E0T
Ef
ENf
ENm
ERChl1
ERChl2
ERPS1
ERPS2
ETRPS1
F6P
F6Pc
Fd
FdT
Fd_
FeS
FeST
FeS_
Fl
Fl0
FlA
FlA_
Flm
G1P
G1Pc
G6P
G6Pc
GAP
GAPc
HIfs
HIft
HIrc
HIrs
I11
I110
I111
I112
I113
I114
I115
I116
I117
I118
I119
I12
I120
I121
I122
I123
I124
I125
I126
I127
I13
I14
I15
I16
I17
I18
I19
I21
I210
I211
I212
I213
I214
I215
I216
I217
I218
I219
I22
I220
I221
I222
I223
I224
I225
I226
I227
I23
I24
I25
I26
I27
I28
I29
I2ADPGlu
I2ADPGlu7
I2ADPGluc
I2AMP
I2AMP7
I2AMPc
I2MP
I2MP7
I2MPc
I2OP
I2OP7
I2OPc
I2PGA
I2PGAc
I31
I310
I311
I312
I313
I314
I315
I316
I317
I318
I319
I32
I320
I321
I322
I323
I324
I325
I326
I327
I33
I34
I35
I36
I37
I38
I39
I3ADP
I3ADP7
I3ADPc
I3PGA
I3PGA7
I3PGAc
I41
I410
I411
I412
I413
I414
I415
I416
I417
I418
I419
I42
I420
I421
I422
I423
I424
I425
I426
I427
I43
I44
I45
I46
I47
I48
I49
I4ATP
I4ATP7
I4ATPc
I4BP
I4BP7
I4BPc
I4OPOP
I4OPOP7
I4OPOPc
j2d
JFl
k2
k2d
k2r
k4
k5
k6
k7
kE0
kE1
kE10
kE12
kE12d
kE13
kE14
kE141
kE142
kE15
kE16
kE17
kE18
kE19
kE20
kE21
kE23
kE24
kE25
kE26
kE27
kE28
kE29
kE3
kE30
kE4
kE41
kE42
kE42d
kE43
kE45
kE46
kE48
kE5
kE50
kE51
kE52
kE53
kE54
kE55
kE6
kE61
kE62
kE63
kE64
kE66
kE7
kE8
kE9
kf
ki
Ki19OPs
Ki24F26BPc
Ki28OPc
Ki42
Km024FBPc
Km028F6Pc
Km10ADPs
Km10ATPs
Km10F6Ps
Km10FBPs
Km11OPc
Km11OPs
Km11PGAc
Km11PGAs
Km11T3Pc
Km11T3Ps
Km12ADPs
Km12ATPs
Km12ATPSs
Km12OPs
Km19ADPGlus
Km19ATPs
Km19G1Ps
Km19OPOPs
Km1ADPs
Km1ATPs
Km1GAPs
Km1OPs
Km1PGAs
Km20ADPGlus
Km20ADPs
Km21ADPc
Km21ATPc
Km21GAPc
Km21OPc
Km21PGAc
Km23DHAPc
Km23FBPc
Km23GAPc
Km24F6Pc
Km24FBPc
Km24OPc
Km27G1Pc
Km27OPOPc
Km27UDPGluc
Km27UTPc
Km28F6Pc
Km28SUCPc
Km28UDPc
Km28UDPGluc
Km29OPc
Km29SUCc
Km29SUCPc
Km3DHAPs
Km3FBPs
Km3GAPs
Km4F6Ps
Km4FBPs
Km4OPs
Km5GAPs
Km5P5Ps
Km6DHAPs
Km6E4Ps
Km6SBPs
Km7OPs
Km7S7Ps
Km7SBPs
Km8F6Ps
Km8GAPs
Km8P5Ps
Km8S7Ps
Km9ADPs
Km9ATPs
Km9Ru5Ps
Km9RuBPs
kN
Kx28OPc
MAL
n2d
NAD
NADP
NADPT
NADT
Oaw
OP 0.0026756840909091
OPATP
OPc
OPT
OPTc
Owc
OXA
P700
P700_
par10
par11
par12
par4
par5
par6
par7
par8
par9
PCf
PCfT
PCf_
PCp
PCpP700
PCpP700T
PCp_
PCT
PQ
PQT
PS1T
PS2A
PS2A_
PS2T
PSU1
PSU2
QH
RFd
RFd_
Ri5P
Ru5P
SUM1
SUM10
SUM11
SUM12
SUM13
SUM14
SUM15
SUM16
SUM17
SUM18
SUM19
SUM2
SUM20
SUM21
SUM22
SUM23
SUM24
SUM25
SUM26
SUM27
SUM3
SUM4
SUM5
SUM6
SUM7
SUM8
SUM9
T810
T950
TKalv
TRf
TRm
UDPc
UDTc
UTPc
V1
V10
V12
V141
V142
V146
V19
V20
V23
V24
V27
V28
V29
V3
V31
V32
V4
V40e
V40pc
V42
V44
V45
V46
V49
V5
V6
V60
V61
V62
V63
V64
V65
V66
V7
V8
V9
Vc
Vcy
Vlu
Vm0
Vm1
Vm10
Vm11
Vm12
Vm141
Vm142
Vm146
Vm19
Vm19a
Vm20
Vm21
Vm23
Vm24
Vm27
Vm28
Vm29
Vm3
Vm31
Vm32
Vm4
Vm42
Vm46
Vm6
Vm60
Vm61
Vm62
Vm63
Vm64
Vm65
Vm66
Vm7
Vm9
Vme
Vm_5
Vm_8
Vo
VOPin
VPGAout
Vst
VT3Pout
Xu5P
+Options
Name Value
Simulation end 1
Logscale 1
Scale y-axis 1000
Simulation start 1e-05
Number of steps 20
Label x-axis time [s]
Label y-axis rel. units scaled by 10^3

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