Repository

Navigation
To browse the projects in the ontology view use either the graphical scheme below or the navigation panel on the left. The root level is displayed after clicking on the Projects button in the main menu bar at the top of the screen. For switching to model view, click on the project name in the navigation tree.

The central feature of the ontology view is the graphical scheme representing the projection of the project to respective biological structures. The graphical scheme is active, the individual model parts implemented in the project are emphasized yellow when moving the mouse over them. After clicking on any implemented part, the scheme is zoomed in. The description panel at the bottom contains all the detailed information relevant for the currently focused project level.

Annotations Tab
All the annotation terms relevant for the currently focused level of the project are displayed on the Annotation Tab below the scheme. Individual annotation data can be unfolded by clicking on the requested annotation item header.

Components Tab
The Components Tab displays all the model species (state variables) relevant for the currently focused project level. Annotation data for particular components are accessible after clicking on the requested component header.

Reactions Tab
Reactions Tab contains information regarding the modeled reactions. After clicking on the particular reaction header, the reacting components and relevant kinetic parameters are displayed.

Parameters Tab
All quantitative parameters are managed under Parameters Tab. Constants are separated from algebraically evaluated parameters.

Simulation Tab
Simulation and SBML export are available by clicking on appropriate buttons at the bottom of the tab. All relevant settings of parameters and initial conditions is listed in respective folders. Folder Options contains parameters of the simulation algorithm.

EPG

“Ribulose 1,5-bisphosphate carboxylase-oxygenase (Rubisco) with bound phosphoglycerate and phosphoglycolate. It is an intermediate in oxygenation reaction of Rubisco.“

EPG
Model states corresponding to the currently selected level:
Initial value: 0.0003206
Dynamic expression: "k6"*"Owc"*"ER"-"k7"*"EPG"
Simulation type: ode
Initial value: 0.0002711
Dynamic expression: "k2"*"Cc"*"ER"-"k4"*"EPP"+"k_4"*"PGA"*"EP"
Simulation type: ode

Constant quantities

Initial value: 36200
Simulation type: fixed
Initial value: 0.00002
Simulation type: fixed
Initial value: 0.00001
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0.0009652
Simulation type: fixed
Initial value: 2.3025851
Simulation type: fixed
Initial value: 0.003
Simulation type: fixed
Initial value: 0.04
Simulation type: fixed
Initial value: 0.00034
Simulation type: fixed
Initial value: 0.5
Simulation type: fixed
Initial value: 0.47
Simulation type: fixed
Initial value: 8
Simulation type: fixed
Initial value: 0.00055
Simulation type: fixed
Initial value: 1
Simulation type: fixed
Initial value: 8
Simulation type: fixed
Initial value: 4
Simulation type: fixed
Initial value: 0.0000015
Simulation type: fixed
Initial value: 0.27
Simulation type: fixed
Initial value: -0.32
Simulation type: fixed
Initial value: -0.33
Simulation type: fixed
Initial value: -0.38
Simulation type: fixed
Initial value: -0.4
Simulation type: fixed
Initial value: -0.34
Simulation type: fixed
Initial value: -0.34
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.365
Simulation type: fixed
Initial value: 0.295
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: -0.05
Simulation type: fixed
Initial value: -0.34
Simulation type: fixed
Initial value: -0.34
Simulation type: fixed
Initial value: 1.6022e-19
Simulation type: fixed
Initial value: 0.16
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0.000015
Simulation type: fixed
Initial value: 0.25
Simulation type: fixed
Initial value: 1
Simulation type: fixed
Initial value: 0.8
Simulation type: fixed
Initial value: -8
Simulation type: fixed
Initial value: 3
Simulation type: fixed
Initial value: -5
Simulation type: fixed
Initial value: 7.3
Simulation type: fixed
Initial value: -1.8
Simulation type: fixed
Initial value: -0.42
Simulation type: fixed
Initial value: 0.4
Simulation type: fixed
Initial value: 1.7
Simulation type: fixed
Initial value: 0.64
Simulation type: fixed
Initial value: -0.13
Simulation type: fixed
Initial value: 1.6
Simulation type: fixed
Initial value: -8
Simulation type: fixed
Initial value: 1.8
Simulation type: fixed
Initial value: -5.5
Simulation type: fixed
Initial value: -4
Simulation type: fixed
Initial value: 0.4
Simulation type: fixed
Initial value: 1.7
Simulation type: fixed
Initial value: 0.71
Simulation type: fixed
Initial value: -0.29
Simulation type: fixed
Initial value: -3.3
Simulation type: fixed
Initial value: -5.5
Simulation type: fixed
Initial value: -3
Simulation type: fixed
Initial value: -4
Simulation type: fixed
Initial value: 1.4
Simulation type: fixed
Initial value: -5.5
Simulation type: fixed
Initial value: 1.1
Simulation type: fixed
Initial value: 0.4
Simulation type: fixed
Initial value: -7.63
Simulation type: fixed
Initial value: -5
Simulation type: fixed
Initial value: -1
Simulation type: fixed
Initial value: -4
Simulation type: fixed
Initial value: 0.1
Simulation type: fixed
Initial value: -5.2
Simulation type: fixed
Initial value: 2
Simulation type: fixed
Initial value: 4
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 50000
Simulation type: fixed
Initial value: 0.012
Simulation type: fixed
Initial value: 3
Simulation type: fixed
Initial value: 3
Simulation type: fixed
Initial value: 5
Simulation type: fixed
Initial value: 0.000001
Simulation type: fixed
Initial value: 3
Simulation type: fixed
Initial value: 0.003
Simulation type: fixed
Initial value: 0.000001
Simulation type: fixed
Initial value: 0.0015
Simulation type: fixed
Initial value: 0.0015
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.00002
Simulation type: fixed
Initial value: 0.00026
Simulation type: fixed
Initial value: 0.00001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.0003
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.00009
Simulation type: fixed
Initial value: 0.00009
Simulation type: fixed
Initial value: 0.00009
Simulation type: fixed
Initial value: 0.0003
Simulation type: fixed
Initial value: 0.000001447
Simulation type: fixed
Initial value: 0.0003
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.0002
Simulation type: fixed
Initial value: 0.000003
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.0008
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 0.0003
Simulation type: fixed
Initial value: 0.00026
Simulation type: fixed
Initial value: 0.0026
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.0006
Simulation type: fixed
Initial value: 0.0002
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 0.0003
Simulation type: fixed
Initial value: 0.00026
Simulation type: fixed
Initial value: 0.0026
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.00035
Simulation type: fixed
Initial value: 0.000019
Simulation type: fixed
Initial value: 0.00026
Simulation type: fixed
Initial value: 0.000061
Simulation type: fixed
Initial value: 0.0017
Simulation type: fixed
Initial value: 0.00003
Simulation type: fixed
Initial value: 0.00003
Simulation type: fixed
Initial value: 0.00013
Simulation type: fixed
Initial value: 0.0002
Simulation type: fixed
Initial value: 0.00035
Simulation type: fixed
Initial value: 0.00058
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.002
Simulation type: fixed
Initial value: 0.01
Simulation type: fixed
Initial value: 0.00005
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.000000001
Simulation type: fixed
Initial value: 0.002
Simulation type: fixed
Initial value: 0.00035
Simulation type: fixed
Initial value: 0.000019
Simulation type: fixed
Initial value: 0.00026
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 0.002
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.000001
Simulation type: fixed
Initial value: 0.000001
Simulation type: fixed
Initial value: 0.000001
Simulation type: fixed
Initial value: 0.000001
Simulation type: fixed
Initial value: 0.000001
Simulation type: fixed
Initial value: 0.000061
Simulation type: fixed
Initial value: 0.000031
Simulation type: fixed
Initial value: 0.0017
Simulation type: fixed
Initial value: 0.00026
Simulation type: fixed
Initial value: 0.00059
Simulation type: fixed
Initial value: 0.000005
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.0003
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.000002
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.00015
Simulation type: fixed
Initial value: 0.00005
Simulation type: fixed
Initial value: 0.003
Simulation type: fixed
Initial value: 0.00001
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.00035
Simulation type: fixed
Initial value: 0.00017
Simulation type: fixed
Initial value: 0.000019
Simulation type: fixed
Initial value: 0.0064
Simulation type: fixed
Initial value: 0.000015
Simulation type: fixed
Initial value: 0.000012
Simulation type: fixed
Initial value: 0.00052
Simulation type: fixed
Initial value: 0.000087
Simulation type: fixed
Initial value: 0.00011
Simulation type: fixed
Initial value: 0.00017
Simulation type: fixed
Initial value: 0.000086
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 0.000035
Simulation type: fixed
Initial value: 0.000094
Simulation type: fixed
Initial value: 99
Simulation type: fixed
Initial value: 0.0084
Simulation type: fixed
Initial value: 1.3807e-23
Simulation type: fixed
Initial value: 0.9
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 70000
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0.87
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 700
Simulation type: fixed
Initial value: 6.022e23
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.00002
Simulation type: fixed
Initial value: 0.00002
Simulation type: fixed
Initial value: 0.21
Simulation type: fixed
Initial value: 0.000001
Simulation type: fixed
Initial value: 0.00004
Simulation type: fixed
Initial value: 0.0003
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 96440
Simulation type: fixed
Initial value: 0.000003567
Simulation type: fixed
Initial value: 0.002276
Simulation type: fixed
Initial value: 7.8
Simulation type: fixed
Initial value: 8.05
Simulation type: fixed
Initial value: 3.93
Simulation type: fixed
Initial value: 3.74
Simulation type: fixed
Initial value: 1.42
Simulation type: fixed
Initial value: 3.93
Simulation type: fixed
Initial value: 6.83
Simulation type: fixed
Initial value: 6.45
Simulation type: fixed
Initial value: 6.65
Simulation type: fixed
Initial value: 6.78
Simulation type: fixed
Initial value: 3.42
Simulation type: fixed
Initial value: 6.83
Simulation type: fixed
Initial value: 4.06
Simulation type: fixed
Initial value: 6.02
Simulation type: fixed
Initial value: 12.4
Simulation type: fixed
Initial value: 6.7
Simulation type: fixed
Initial value: 7.1
Simulation type: fixed
Initial value: 5.2
Simulation type: fixed
Initial value: 7.06
Simulation type: fixed
Initial value: 6.82
Simulation type: fixed
Initial value: 9.4
Simulation type: fixed
Initial value: 5.65
Simulation type: fixed
Initial value: 0.000015
Simulation type: fixed
Initial value: 0.00000155
Simulation type: fixed
Initial value: 0.00000201
Simulation type: fixed
Initial value: 1000
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 1000000000
Simulation type: fixed
Initial value: 0.01
Simulation type: fixed
Initial value: 0.1
Simulation type: fixed
Initial value: 1000
Simulation type: fixed
Initial value: 1000
Simulation type: fixed
Initial value: 1000
Simulation type: fixed
Initial value: 1000
Simulation type: fixed
Initial value: 8.3144
Simulation type: fixed
Initial value: 0.38
Simulation type: fixed
Initial value: 0.015
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0.0019865
Simulation type: fixed
Initial value: 1
Simulation type: fixed
Initial value: 0.05
Simulation type: fixed
Initial value: 0.000615
Simulation type: fixed
Initial value: 22.5
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.00001
Simulation type: fixed
Initial value: 0.000148
Simulation type: fixed
Initial value: 0.0003
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0.0005
Simulation type: fixed
Initial value: 0.0004
Simulation type: fixed
Initial value: 0.001
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0.00002
Simulation type: fixed
Initial value: 0.00005
Simulation type: fixed
Initial value: 0.000003613
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.00002
Simulation type: fixed
Initial value: 0.00007226
Simulation type: fixed
Initial value: 0.0000013
Simulation type: fixed
Initial value: 0.00001807
Simulation type: fixed
Initial value: 0.0004
Simulation type: fixed
Initial value: 0.000000001806
Simulation type: fixed
Initial value: 0.000000000003613
Simulation type: fixed
Initial value: 0.0002
Simulation type: fixed
Initial value: 0.0003
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0.0002
Simulation type: fixed
Initial value: 0
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.0000015
Simulation type: fixed
Initial value: 0.000001
Simulation type: fixed
Initial value: 0.00001
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.0001
Simulation type: fixed
Initial value: 0.01
Simulation type: fixed
Initial value: 0.003
Simulation type: fixed
Initial value: 0.001445
Simulation type: fixed
Initial value: 0.00000000000001
Simulation type: fixed

Assigned quantities

Initial expression: ("PS2T"*"j2d"*"k2r"*"k2r"+"PS2T"*"j2d"*"j2d"*"k2r"+"PS2T"*"j2d"*"j2d"*"n2d"+"PS2T"*"k2r"*"k2r"*"n2r"+"PS2T"*"j2d"*"j2r"*"k2r"+"PS2T"*"j2d"*"k2d"*"k2r"+"PS2T"*"j2d"*"k2r"*"n2d"+"PS2T"*"j2d"*"k2r"*"n2r")/("j2d"*"k2d"*"k2d"+"j2d"*"j2d"*"k2d"+"j2d"*"k2r"*"k2r"+"j2r"*"k2d"*"k2d"+"j2d"*"j2d"*"k2r"+"j2r"*"j2r"*"k2d"+"j2r"*"k2r"*"k2r"+"j2r"*"j2r"*"k2r"+"j2d"*"j2d"*"n2d"+"j2r"*"j2r"*"n2r"+"k2d"*"k2d"*"n2d"+"k2r"*"k2r"*"n2r"+2*"j2d"*"j2r"*"k2d"+2*"j2d"*"j2r"*"k2r"+2*"j2d"*"k2d"*"k2r"+2*"j2r"*"k2d"*"k2r"+"j2d"*"j2r"*"n2d"+"j2d"*"j2r"*"n2r"+"j2d"*"k2d"*"n2d"+"j2d"*"k2d"*"n2r"+"j2d"*"k2r"*"n2d"+"j2r"*"k2d"*"n2d"+"j2d"*"k2r"*"n2r"+"j2r"*"k2d"*"n2r"+"j2r"*"k2r"*"n2d"+"j2r"*"k2r"*"n2r"+"k2d"*"k2r"*"n2d"+"k2d"*"k2r"*"n2r")
Simulation type: assignment
Initial expression: "Vst"*("Vc"-"Vo"/2)-"Rmit"
Simulation type: assignment
Initial expression: "ENf_"/"ENfT"
Simulation type: assignment
Initial expression: "ENm_"/"ENmT"
Simulation type: assignment
Initial expression: "ADT"-"ATP"
Simulation type: assignment
Initial expression: "ADTc"-"ATPc"
Simulation type: assignment
Initial expression: "ADTs"/"Vst"
Simulation type: assignment
Initial expression: "ADTcs"/"Vcy"
Simulation type: assignment
Initial expression: "DenAI"*"Vm11"/"Den11"
Simulation type: assignment
Initial expression: "DenAII"*"Vm11"/"Den11"
Simulation type: assignment
Initial expression: ("PS2T"*"j2d"*"k2d"*"k2d"+"PS2T"*"j2d"*"j2d"*"k2d"+"PS2T"*"j2d"*"j2r"*"k2d"+"PS2T"*"j2d"*"k2d"*"k2r"+"PS2T"*"j2d"*"j2r"*"n2r"+"PS2T"*"j2d"*"k2d"*"n2r"+"PS2T"*"j2r"*"k2r"*"n2r"+"PS2T"*"k2d"*"k2r"*"n2r")/("j2d"*"k2d"*"k2d"+"j2d"*"j2d"*"k2d"+"j2d"*"k2r"*"k2r"+"j2r"*"k2d"*"k2d"+"j2d"*"j2d"*"k2r"+"j2r"*"j2r"*"k2d"+"j2r"*"k2r"*"k2r"+"j2r"*"j2r"*"k2r"+"j2d"*"j2d"*"n2d"+"j2r"*"j2r"*"n2r"+"k2d"*"k2d"*"n2d"+"k2r"*"k2r"*"n2r"+2*"j2d"*"j2r"*"k2d"+2*"j2d"*"j2r"*"k2r"+2*"j2d"*"k2d"*"k2r"+2*"j2r"*"k2d"*"k2r"+"j2d"*"j2r"*"n2d"+"j2d"*"j2r"*"n2r"+"j2d"*"k2d"*"n2d"+"j2d"*"k2d"*"n2r"+"j2d"*"k2r"*"n2d"+"j2r"*"k2d"*"n2d"+"j2d"*"k2r"*"n2r"+"j2r"*"k2d"*"n2r"+"j2r"*"k2r"*"n2d"+"j2r"*"k2r"*"n2r"+"k2d"*"k2r"*"n2d"+"k2d"*"k2r"*"n2r")
Simulation type: assignment
Initial expression: exp(401.0/(105.7+"Tleaf")-3.252)
Simulation type: assignment
Initial expression: exp(131.2/(72.9+"Tleaf")-4.815)
Simulation type: assignment
Initial expression: ("PS2T"*"j2r"*"k2r"*"k2r"+"PS2T"*"j2r"*"j2r"*"k2r"+"PS2T"*"j2d"*"j2r"*"k2r"+"PS2T"*"j2r"*"k2d"*"k2r"+"PS2T"*"j2d"*"j2r"*"n2d"+"PS2T"*"j2d"*"k2d"*"n2d"+"PS2T"*"j2r"*"k2r"*"n2d"+"PS2T"*"k2d"*"k2r"*"n2d")/("j2d"*"k2d"*"k2d"+"j2d"*"j2d"*"k2d"+"j2d"*"k2r"*"k2r"+"j2r"*"k2d"*"k2d"+"j2d"*"j2d"*"k2r"+"j2r"*"j2r"*"k2d"+"j2r"*"k2r"*"k2r"+"j2r"*"j2r"*"k2r"+"j2d"*"j2d"*"n2d"+"j2r"*"j2r"*"n2r"+"k2d"*"k2d"*"n2d"+"k2r"*"k2r"*"n2r"+2*"j2d"*"j2r"*"k2d"+2*"j2d"*"j2r"*"k2r"+2*"j2d"*"k2d"*"k2r"+2*"j2r"*"k2d"*"k2r"+"j2d"*"j2r"*"n2d"+"j2d"*"j2r"*"n2r"+"j2d"*"k2d"*"n2d"+"j2d"*"k2d"*"n2r"+"j2d"*"k2r"*"n2d"+"j2r"*"k2d"*"n2d"+"j2d"*"k2r"*"n2r"+"j2r"*"k2d"*"n2r"+"j2r"*"k2r"*"n2d"+"j2r"*"k2r"*"n2r"+"k2d"*"k2r"*"n2d"+"k2d"*"k2r"*"n2r")
Simulation type: assignment
Initial expression: "Ca"*"Patm"/"Rgas"/"TKalv"/1000*"Bc"
Simulation type: assignment
Initial expression: ("Caw"/("Rgw"+"Rmd")+"Vst"*"k6"*"Owc"*"ER"/2+"Rmit")/(1/("Rgw"+"Rmd")+"Vst"*"k2"*"ER")
Simulation type: assignment
Initial expression: "Chl"*"Cchl1"
Simulation type: assignment
Initial expression: "Chl"*"Cchl2"
Simulation type: assignment
Initial expression: "CytfT"-"CytF_"
Simulation type: assignment
Initial expression: "CytfTs"/"Vme"
Simulation type: assignment
Initial expression: "CytPCf_"-"PCf_"
Simulation type: assignment
Initial expression: "CytPCfT" - "CytPCf_"
Simulation type: assignment
Initial expression: "CytfT"+"PCfT"
Simulation type: assignment
Initial expression: ("PS2T"*"j2r"*"k2d"*"k2d"+"PS2T"*"j2r"*"j2r"*"k2d"+"PS2T"*"j2r"*"j2r"*"n2r"+"PS2T"*"k2d"*"k2d"*"n2d"+"PS2T"*"j2d"*"j2r"*"k2d"+"PS2T"*"j2r"*"k2d"*"k2r"+"PS2T"*"j2r"*"k2d"*"n2d"+"PS2T"*"j2r"*"k2d"*"n2r")/("j2d"*"k2d"*"k2d"+"j2d"*"j2d"*"k2d"+"j2d"*"k2r"*"k2r"+"j2r"*"k2d"*"k2d"+"j2d"*"j2d"*"k2r"+"j2r"*"j2r"*"k2d"+"j2r"*"k2r"*"k2r"+"j2r"*"j2r"*"k2r"+"j2d"*"j2d"*"n2d"+"j2r"*"j2r"*"n2r"+"k2d"*"k2d"*"n2d"+"k2r"*"k2r"*"n2r"+2*"j2d"*"j2r"*"k2d"+2*"j2d"*"j2r"*"k2r"+2*"j2d"*"k2d"*"k2r"+2*"j2r"*"k2d"*"k2r"+"j2d"*"j2r"*"n2d"+"j2d"*"j2r"*"n2r"+"j2d"*"k2d"*"n2d"+"j2d"*"k2d"*"n2r"+"j2d"*"k2r"*"n2d"+"j2r"*"k2d"*"n2d"+"j2d"*"k2r"*"n2r"+"j2r"*"k2d"*"n2r"+"j2r"*"k2r"*"n2d"+"j2r"*"k2r"*"n2r"+"k2d"*"k2r"*"n2d"+"k2d"*"k2r"*"n2r")
Simulation type: assignment
Initial expression: 1+("F6Pc"/"Km28F6Pc")*("F6Pc"/"Km28F6Pc")+"UDPGluc"/"Km28UDPGluc"+"SuCPc"/"Km28SUCPc"+"UDPc"/"Km28UDPc"+("F6Pc"/"Km28F6Pc")*("F6Pc"/"Km28F6Pc")*"UDPGluc"/"Km28UDPGluc"+"UDPc"/"Km28UDPc"*"SuCPc"/"Km28SUCPc"+"OPc"/"Ki28OPc"
Simulation type: assignment
Initial expression: "DenAI"+"DenAII"+"DenAI"*"DenAII"
Simulation type: assignment
Initial expression: 1+"ADP"/"Km12ADPs"+"OPATP"/"Km12OPs"+"ADP"*"OPATP"/"Km12ADPs"/"Km12OPs"+"ATP"/"Km12ATPSs"
Simulation type: assignment
Initial expression: 1+(1+"GAP"/"Km5GAPs")*("F6P"/"Km8F6Ps"+"S7P"/"Km8S7Ps")+"GAP"/"Km8GAPs"+1/"Km8P5Ps"*("Xu5P"*(1+"E4P"*"Ri5P"/"Km5P5Ps")+"E4P"+"Ri5P")
Simulation type: assignment
Initial expression: "OP"/"Km11OPs"+"PGA"/"Km11PGAs"+"T3P"/"Km11T3Ps"
Simulation type: assignment
Initial expression: "OPc"/"Km11OPc"+"PGAc"/"Km11PGAc"+"T3Pc"/"Km11T3Pc"
Simulation type: assignment
Initial expression: 1+"E4P"/"Km6E4Ps"+"DHAP"/"Km6DHAPs"+"SBP"/"Km6SBPs"+"E4P"*"DHAP"/"Km6E4Ps"/"Km6DHAPs"
Simulation type: assignment
Initial expression: 1+"FBP"/"Km4FBPs"+"F6P"/"Km4F6Ps"+"F6P"*"OP"/"Km4F6Ps"/"Km4OPs"
Simulation type: assignment
Initial expression: 1+"GAP"/"Km3GAPs"+"DHAP"/"Km3DHAPs"+"FBP"/"Km3FBPs"+"GAP"*"DHAP"/"Km3GAPs"/"Km3DHAPs"
Simulation type: assignment
Initial expression: "Km64NADPH"*"Km64OXA"*(1+"NADPH"/"Km64NADPH"+"OXA"/"Km64OXA"+"MAL"/"Km64MAL"+"NADP"/"Km64NADP"+"NADPH"/"Km64NADPH"*"OXA"/"Km64OXA"+"MAL"/"Km64MAL"*"NADP"/"Km64NADP")
Simulation type: assignment
Initial expression: 1+"PGA"/"Km1PGAs"+"ATP"/"Km1ATPs"+"ADP"/"Km1ADPs"+"GAP"/"Km1GAPs"+"OP"/"Km1OPs"+"PGA"/"Km1PGAs"*"ATP"/"Km1ATPs"+"ADP"/"Km1ADPs"*"GAP"/"Km1GAPs"*"OP"/"Km1OPs"
Simulation type: assignment
Initial expression: "T3P"-"GAP"
Simulation type: assignment
Initial expression: "T3Pc"-"GAPc"
Simulation type: assignment
Initial expression: "Vm0"/"kcat"
Simulation type: assignment
Initial expression: "E0T"-"ER"-"EPP"-"EPG"-"EP"-"EOP"
Simulation type: assignment
Initial expression: "ENfT"-"ENf_"
Simulation type: assignment
Initial expression: "ENmT"-"ENm_"
Simulation type: assignment
Initial expression: "PFD"*"Labs"/"Chl"+0.94*"FarRed"/"Chl1"
Simulation type: assignment
Initial expression: "PFD"*"Labs"/"Chl"+0.06*"FarRed"/"Chl2"
Simulation type: assignment
Initial expression: "PSU1"*"ERChl1"
Simulation type: assignment
Initial expression: "PSU2"*"ERChl2"/(1+"kf"+"Nq"*"kN"+"ki")
Simulation type: assignment
Initial expression: "ERPS1"*"P700_"/"PS1T"*"FeS"
Simulation type: assignment
Initial expression: "HeP"*"kE15"/(1+"kE16"+"kE15")
Simulation type: assignment
Initial expression: "HePc"*"kE25"/(1+"kE26"+"kE25")
Simulation type: assignment
Initial expression: "FdT"-"Fd_"
Simulation type: assignment
Initial expression: "FdTs"/"Vst"
Simulation type: assignment
Initial expression: ("kE48"*"FeS_"*"FdT")/("FeS"+"kE48"*"FeS_")
Simulation type: assignment
Initial expression: "FeST"-"FeS_"
Simulation type: assignment
Initial expression: "PS1T"
Simulation type: assignment
Initial expression: (-1*"par11"+sqrt("par11"*"par11"-4*"par10"*"par12"))/(2*"par10")
Simulation type: assignment
Initial expression: ("FlA"*"PS2A"+"FlA_"*"PS2A_")/"PS2T"
Simulation type: assignment
Initial expression: "FlA"
Simulation type: assignment
Initial expression: "kf"/(1+"kf"+"Nq"*"kN"+"ki")
Simulation type: assignment
Initial expression: "kf"/("kf"+"Nq"*"kN"+"ki")
Simulation type: assignment
Initial expression: "FlA_"
Simulation type: assignment
Initial expression: "HeP"*"kE16"/(1+"kE16"+"kE15")
Simulation type: assignment
Initial expression: "HePc"*"kE26"/(1+"kE26"+"kE25")
Simulation type: assignment
Initial expression: "HeP"/(1+"kE16"+"kE15")
Simulation type: assignment
Initial expression: "HePc"/(1+"kE26"+"kE25")
Simulation type: assignment
Initial expression: "T3P"/(1+"kE13")
Simulation type: assignment
Initial expression: "T3Pc"/(1+"kE13")
Simulation type: assignment
Initial expression: exp("a_"*(-"pHs"))
Simulation type: assignment
Initial expression: "Hlt"/1000
Simulation type: assignment
Initial expression: exp("a_"*(-"pHc"+7))
Simulation type: assignment
Initial expression: exp("a_"*(-"pHs"+7))
Simulation type: assignment
Initial expression: exp("a_"*("pHs"-"pK1PGA"))
Simulation type: assignment
Initial expression: exp("a_"*("pHc"-"pK1PGA"))
Simulation type: assignment
Initial expression: exp("a_"*("pHc"-2.12))
Simulation type: assignment
Initial expression: exp("a_"*("pHc"-2.12))
Simulation type: assignment
Initial expression: exp("a_"*("pHc"-1))
Simulation type: assignment
Initial expression: exp("a_"*("pHc"-1))
Simulation type: assignment
Initial expression: exp("a_"*("pHc"-"pK1AMP"))
Simulation type: assignment
Initial expression: exp("a_"*("pHc"-2.12))
Simulation type: assignment
Initial expression: exp("a_"*("pHc"-2.12))
Simulation type: assignment
Initial expression: exp("a_"*("pHc"-"pK1ADPGlu"))
Simulation type: assignment
Initial expression: exp("a_"*(7-"pK1PGA"))
Simulation type: assignment
Initial expression: exp("a_"*("pHs"-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(7-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(7-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(7-1))
Simulation type: assignment
Initial expression: exp("a_"*(7-1))
Simulation type: assignment
Initial expression: exp("a_"*(7-"pK1AMP"))
Simulation type: assignment
Initial expression: exp("a_"*(7-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(7-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(7-"pK1ADPGlu"))
Simulation type: assignment
Initial expression: exp("a_"*("pHs"-2.12))
Simulation type: assignment
Initial expression: exp("a_"*("pHs"-1))
Simulation type: assignment
Initial expression: exp("a_"*("pHs"-1))
Simulation type: assignment
Initial expression: exp("a_"*("pHs"-"pK1AMP"))
Simulation type: assignment
Initial expression: exp("a_"*("pHs"-2.12))
Simulation type: assignment
Initial expression: exp("a_"*("pHs"-2.12))
Simulation type: assignment
Initial expression: exp("a_"*("pHs"-"pK1ADPGlu"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHs"-"pK1PGA"-"pK2PGA"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHc"-"pK1PGA"-"pK2PGA"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHc"-2.12-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHc"-2.12-"pK2MP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHc"-1-2))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHc"-1-"pK2ADP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHc"-"pK1AMP"-"pK2AMP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHc"-2.12-"pK2OP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHc"-2.12-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHc"-"pK1ADPGlu"-"pK2ADPGlu"))
Simulation type: assignment
Initial expression: exp("a_"*(2*7-"pK1PGA"-"pK2PGA"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHs"-2.12-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(2*7-2.12-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(2*7-2.12-"pK2MP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*7-1-2))
Simulation type: assignment
Initial expression: exp("a_"*(2*7-1-"pK2ADP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*7-"pK1AMP"-"pK2AMP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*7-2.12-"pK2OP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*7-2.12-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(2*7-"pK1ADPGlu"-"pK2ADPGlu"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHs"-2.12-"pK2MP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHs"-1-2))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHs"-1-"pK2ADP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHs"-"pK1AMP"-"pK2AMP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHs"-2.12-"pK2OP"))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHs"-2.12-2.12))
Simulation type: assignment
Initial expression: exp("a_"*(2*"pHs"-"pK1ADPGlu"-pK2ADPGlu))
Simulation type: assignment
Initial expression: "I29"/"SUM9"
Simulation type: assignment
Initial expression: "I227"/"SUM27"
Simulation type: assignment
Initial expression: "I218"/"SUM18"
Simulation type: assignment
Initial expression: "I26"/"SUM6"
Simulation type: assignment
Initial expression: "I224"/"SUM24"
Simulation type: assignment
Initial expression: "I215"/"SUM15"
Simulation type: assignment
Initial expression: "I23"/"SUM3"
Simulation type: assignment
Initial expression: "I221"/"SUM21"
Simulation type: assignment
Initial expression: "I212"/"SUM12"
Simulation type: assignment
Initial expression: "I27"/"SUM7"
Simulation type: assignment
Initial expression: "I225"/"SUM25"
Simulation type: assignment
Initial expression: "I216"/"SUM16"
Simulation type: assignment
Initial expression: "I21"/"SUM1"
Simulation type: assignment
Initial expression: "I210"/"SUM10"
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHs"-"pK1PGA"-"pK2PGA"-"pK3PGA"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHc"-"pK1PGA"-"pK2PGA"-"pK3PGA"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHc"-2.12-2.12-"pK3BP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHc"-2.12-"pK2MP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHc"-1-2-"pK3ATP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHc"-1-"pK2ADP"-"pK3ADP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHc"-"pK1AMP"-"pK2AMP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHc"-2.12-"pK2OP"-"pK3OP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHc"-2.12-2.12-"pK3OPOP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHc"-"pK1ADPGlu"-"pK2ADPGlu"-14))
Simulation type: assignment
Initial expression: exp("a_"*(3*7-"pK1PGA"-"pK2PGA"-"pK3PGA"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHs"-2.12-2.12-"pK3BP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*7-2.12-2.12-"pK3BP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*7-2.12-"pK2MP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(3*7-1-2-"pK3ATP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*7-1-"pK2ADP"-"pK3ADP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*7-"pK1AMP"-"pK2AMP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(3*7-2.12-"pK2OP"-"pK3OP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*7-2.12-2.12-"pK3OPOP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*7-"pK1ADPGlu"-"pK2ADPGlu"-14))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHs"-2.12-"pK2MP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHs"-1-2-"pK3ATP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHs"-1-"pK2ADP"-"pK3ADP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHs"-"pK1AMP"-"pK2AMP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHs"-2.12-"pK2OP"-"pK3OP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHs"-2.12-2.12-"pK3OPOP"))
Simulation type: assignment
Initial expression: exp("a_"*(3*"pHs"-"pK1ADPGlu"-"pK2ADPGlu"-14))
Simulation type: assignment
Initial expression: "I35"/"SUM5"
Simulation type: assignment
Initial expression: "I323"/"SUM23"
Simulation type: assignment
Initial expression: "I314"/"SUM14"
Simulation type: assignment
Initial expression: "I31"/"SUM1"
Simulation type: assignment
Initial expression: "I319"/"SUM19"
Simulation type: assignment
Initial expression: "I310"/"SUM10"
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHs"-"pK1PGA"-"pK2PGA"-"pK3PGA"-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHc"-"pK1PGA"-"pK2PGA"-"pK3PGA"-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHc"-2.12-2.12-"pK3BP"-"pK4BP"))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHc"-2.12-"pK2MP"-14-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHc"-1-2-"pK3ATP"-"pK4ATP"))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHc"-1-"pK2ADP"-"pK3ADP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHc"-"pK1AMP"-"pK2AMP"-14-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHc"-2.12-"pK2OP"-"pK3OP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHc"-2.12-2.12-"pK3OPOP"-"pK4OPOP"))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHc"-"pK1ADPGlu"-"pK2ADPGlu"-14-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*7-"pK1PGA"-"pK2PGA"-"pK3PGA"-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHs"-2.12-2.12-"pK3BP"-"pK4BP"))
Simulation type: assignment
Initial expression: exp("a_"*(4*7-2.12-2.12-"pK3BP"-"pK4BP"))
Simulation type: assignment
Initial expression: exp("a_"*(4*7-2.12-"pK2MP"-14-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*7-1-2-"pK3ATP"-"pK4ATP"))
Simulation type: assignment
Initial expression: exp("a_"*(4*7-1-"pK2ADP"-"pK3ADP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*7-"pK1AMP"-"pK2AMP"-14-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*7-2.12-"pK2OP"-"pK3OP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*7-2.12-2.12-"pK3OPOP"-"pK4OPOP"))
Simulation type: assignment
Initial expression: exp("a_"*(4*7-"pK1ADPGlu"-"pK2ADPGlu"-14-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHs"-2.12-"pK2MP"-14-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHs"-1-2-"pK3ATP"-"pK4ATP"))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHs"-1-"pK2ADP"-"pK3ADP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHs"-"pK1AMP"-"pK2AMP"-14-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHs"-2.12-"pK2OP"-"pK3OP"-14))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHs"-2.12-2.12-"pK3OPOP"-"pK4OPOP"))
Simulation type: assignment
Initial expression: exp("a_"*(4*"pHs"-"pK1ADPGlu"-"pK2ADPGlu"-14-14))
Simulation type: assignment
Initial expression: "I44"/"SUM4"
Simulation type: assignment
Initial expression: "I422"/"SUM22"
Simulation type: assignment
Initial expression: "I413"/"SUM13"
Simulation type: assignment
Initial expression: "I42"/"SUM2"
Simulation type: assignment
Initial expression: "I420"/"SUM20"
Simulation type: assignment
Initial expression: "I411"/"SUM11"
Simulation type: assignment
Initial expression: "I48"/"SUM8"
Simulation type: assignment
Initial expression: "I426"/"SUM26"
Simulation type: assignment
Initial expression: "I417"/"SUM17"
Simulation type: assignment
Initial expression: 1/"Tau2"
Simulation type: assignment
Initial expression: "PFD"*"Labs"*"Cchl2"*("Flm"-"Fl")/"Flm"
Simulation type: assignment
Initial expression: "Vm0"/"Km0CO2"/"E0T"
Simulation type: assignment
Initial expression: "RC45"*"PQ"
Simulation type: assignment
Initial expression: "RC45"*"PQ_"/"kE45"
Simulation type: assignment
Initial expression: 2*"Vm0"/"E0T"
Simulation type: assignment
Initial expression: "k4"
Simulation type: assignment
Initial expression: "k2"/"Ksp"
Simulation type: assignment
Initial expression: 0.5*"k4"
Simulation type: assignment
Initial expression: exp(-1*"G0"/("R_"*"TKalv"))*("I3PGA7"*"I3PGA7")/"I4BP7"*"I4BP"/("I3PGA"*"I3PGA")
Simulation type: assignment
Initial expression: exp(-1*"G1"/("R_"*"TKalv"))*("I2MP7"*"I3ADP7")/("I3PGA7"*"I4ATP7")
Simulation type: assignment
Initial expression: exp(-1*"G10"/("R_"*"TKalv"))*("I3ADP7"*"I4BP7")/("I4ATP7"*"I2MP7")
Simulation type: assignment
Initial expression: exp(-1*"G12"/("R_"*"TKalv"))*"I4ATP7"/("I3ADP7"*"I2OP7")*("I3ADP"*"I2OP")/"I4ATP"
Simulation type: assignment
Initial expression: "kE12"*exp("HPR"*log("HIft"/"HIfs"))
Simulation type: assignment
Initial expression: exp(-1*"G13"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G14"/("R_"*"TKalv"))*("I2AMP7"*"I4ATP7")/("I3ADP7"*"I3ADP7")*"I3ADP"*"I3ADP"/"I4ATP"/"I2AMP"
Simulation type: assignment
Initial expression: exp(-1.1604e4*("EFd"-1*"ENADP")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("EFd"-"ECytf")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1*"G15"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G16"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G17"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G18"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G19"/("R_"*"TKalv"))*("I4OPOP7"*"I2ADPGlu7")/("I4ATP7"*"I2MP7")*"I4ATP"*"I2MP"/"I4OPOP"/"I2ADPGlu"
Simulation type: assignment
Initial expression: exp(-1*"G20"/("R_"*"TKalv"))*"I3ADP7"/"I2ADPGlu7"*"I2ADPGlu"/"I3ADP"
Simulation type: assignment
Initial expression: exp(-1*"G21"/("R_"*"TKalv"))*("I2MP7"*"I3ADP7")/("I3PGA7"*"I4ATP7")
Simulation type: assignment
Initial expression: exp(-1*"G23"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G24"/("R_"*"TKalv"))*("I2MP7"*"I2OP7")/"I4BP7"*"I4BPc"/"I2MPc"/"I2OPc"
Simulation type: assignment
Initial expression: exp(-1*"G25"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G26"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G27"/("R_"*"TKalv"))*("I2ADPGlu7"*1)/("I2MP7"*"I4ATP7")*"I2MPc"*"I4ATPc"/"I2ADPGluc"
Simulation type: assignment
Initial expression: exp(-1*"G28"/("R_"*"TKalv"))*("I2MP7"*"I3ADP7")/("I2MP7"*"I2ADPGlu7")*"I2ADPGluc"/"I3ADPc"
Simulation type: assignment
Initial expression: exp(-1*"G29"/("R_"*"TKalv"))*1/"I2MP7"*"I2MPc"
Simulation type: assignment
Initial expression: exp(-1*"G3"/("R_"*"TKalv"))*"I4BP7"/("I2MP7"*"I2MP7")*("I2MP"*"I2MP")/"I4BP"
Simulation type: assignment
Initial expression: exp(-1*"G30"/("R_"*"TKalv"))*("I2MP7"*"I4OPOP7")/("I4BP7"*"I2OP7")*"I4BPc"*"I2OPc"/"I2MPc"/"I4OPOPc"
Simulation type: assignment
Initial expression: exp(-1*"G4"/("R_"*"TKalv"))*("I2MP7"*"I2OP7")/"I4BP7"*"I4BP"/"I2MP"/"I2OP"
Simulation type: assignment
Initial expression: exp(-1.1604e4*("ECytf"-"EPC")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("EPQ"-"ECytf")/"TKalv")
Simulation type: assignment
Initial expression: "kE42"*exp("HER"*log("HIfs"/"HIft"))
Simulation type: assignment
Initial expression: exp(-1.1604e4*("EPC"-"EP700")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("EQa"-"EPQ")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("ENADP"-"EPQ")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("EFeS"-1*"EFd")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1*"G5"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-"a_"*"pK50")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("EFd"-1*"EFd")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("EFd"-1*"Etrf")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("Etrf"-1*"Eenf")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("EFd"-1*"Etrm")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1.1604e4*("Etrm"-1*"Eenm")/"TKalv")
Simulation type: assignment
Initial expression: exp(-1*"G6"/("R_"*"TKalv"))*"I4BP7"/("I2MP7"*"I2MP7")*("I2MP"*"I2MP")/"I4BP"
Simulation type: assignment
Initial expression: exp(-1*"G61"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G62"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G63"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G64"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G66"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G7"/("R_"*"TKalv"))*("I2MP7"*"I2OP7")/"I4BP7"*"I4BP"/"I2MP"/"I2OP"
Simulation type: assignment
Initial expression: exp(-1*"G8"/("R_"*"TKalv"))
Simulation type: assignment
Initial expression: exp(-1*"G9"/("R_"*"TKalv"))*("I4BP7"*"I3ADP7")/("I4ATP7"*"I2MP7")*"I4ATP"*"I2MP"/"I4BP"/"I3ADP"
Simulation type: assignment
Initial expression: "F0"/"Fmd"/(1-"F0"/"Fmd")
Simulation type: assignment
Initial expression: "kf"*("Fmd"/"Fmdi"-1)
Simulation type: assignment
Initial expression: "Ki19OP"/"I2OP"
Simulation type: assignment
Initial expression: "Ki24F26BP"/"I4BPc"
Simulation type: assignment
Initial expression: "Ki28OP"/"I2OPc"
Simulation type: assignment
Initial expression: exp(-"a_"*"pK42")
Simulation type: assignment
Initial expression: "Km024FBP"/"I4BPc"
Simulation type: assignment
Initial expression: "Km028F6P"/"I2MPc"
Simulation type: assignment
Initial expression: "Km10ADP"/"I3ADP"
Simulation type: assignment
Initial expression: "Km10ATP"/"I4ATP"
Simulation type: assignment
Initial expression: "Km10F6P"/"I2MP"
Simulation type: assignment
Initial expression: "Km10FBP"/"I4BP"
Simulation type: assignment
Initial expression: "Km11OP"/"I2OPc"
Simulation type: assignment
Initial expression: "Km11OP"/"I2OP"
Simulation type: assignment
Initial expression: "Km11PGA"/"I2PGAc"
Simulation type: assignment
Initial expression: "Km11PGA"/"I2PGA"
Simulation type: assignment
Initial expression: "Km11T3P"/"I2MPc"
Simulation type: assignment
Initial expression: "Km11T3P"/"I2MP"
Simulation type: assignment
Initial expression: "Km12ADP"/"I3ADP"
Simulation type: assignment
Initial expression: "Km12ATP"/"I4ATP"
Simulation type: assignment
Initial expression: "kE12d"*"Km12ADPs"*"Km12OPs"
Simulation type: assignment
Initial expression: "Km12OP"/"I2OP"
Simulation type: assignment
Initial expression: "Km19ADPGlu"/"I2ADPGlu"
Simulation type: assignment
Initial expression: "Km19ATP"/"I4ATP"
Simulation type: assignment
Initial expression: "Km19G1P"/"I2MP"
Simulation type: assignment
Initial expression: "Km19OPOP"/"I4OPOP"
Simulation type: assignment
Initial expression: "Km1ADP"/"I3ADP"
Simulation type: assignment
Initial expression: "Km1ATP"/"I4ATP"
Simulation type: assignment
Initial expression: "Km1GAP"/"I2MP"
Simulation type: assignment
Initial expression: "Km1OP"/"I2OP"
Simulation type: assignment
Initial expression: "Km1PGA"/"I3PGA"
Simulation type: assignment
Initial expression: "Km20ADPGlu"/"I2ADPGlu"
Simulation type: assignment
Initial expression: "Km20ADP"/"I3ADP"
Simulation type: assignment
Initial expression: "Km21ADP"/"I3ADPc"
Simulation type: assignment
Initial expression: "Km21ATP"/"I4ATPc"
Simulation type: assignment
Initial expression: "Km21GAP"/"I2MPc"
Simulation type: assignment
Initial expression: "Km21OP"/"I2OPc"
Simulation type: assignment
Initial expression: "Km21PGA"/"I2PGAc"
Simulation type: assignment
Initial expression: "Km23DHAP"/"I2MPc"
Simulation type: assignment
Initial expression: "Km23FBP"/"I4BPc"
Simulation type: assignment
Initial expression: "Km23GAP"/"I2MPc"
Simulation type: assignment
Initial expression: "Km24F6P"/"I2MPc"
Simulation type: assignment
Initial expression: "Km024FBPc"*(1+("F26BPc"/"Ki24F26BPc"))
Simulation type: assignment
Initial expression: "Km24OP"/"I2OPc"
Simulation type: assignment
Initial expression: "Km27G1P"/"I2MPc"
Simulation type: assignment
Initial expression: "Km27OPOP"/"I4OPOPc"
Simulation type: assignment
Initial expression: "Km27UDPGlu"/"I2ADPGluc"
Simulation type: assignment
Initial expression: "Km27UTP"/"I4ATPc"
Simulation type: assignment
Initial expression: "Km028F6Pc"*(1+"OPc"/"Kx28OPc")
Simulation type: assignment
Initial expression: "Km28SUCP"/"I2MPc"
Simulation type: assignment
Initial expression: "Km28UDP"/"I3ADPc"
Simulation type: assignment
Initial expression: "Km28UDPGlu"/"I2ADPGluc"
Simulation type: assignment
Initial expression: "Km29OP"/"I2OPc"
Simulation type: assignment
Initial expression: "Km29SUC"
Simulation type: assignment
Initial expression: "Km29SUCP"/"I2MPc"
Simulation type: assignment
Initial expression: "Km3DHAP"/"I2MP"
Simulation type: assignment
Initial expression: "Km3FBP"/"I4BP"
Simulation type: assignment
Initial expression: "Km3GAP"/"I2MP"
Simulation type: assignment
Initial expression: "Km4F6P"/"I2MP"
Simulation type: assignment
Initial expression: "Km4FBP"/"I4BP"
Simulation type: assignment
Initial expression: "Km4OP"/"I2OP"
Simulation type: assignment
Initial expression: "Km5GAP"/"I2MP"
Simulation type: assignment
Initial expression: "Km5P5P"/"I2MP"
Simulation type: assignment
Initial expression: "Km6DHAP"/"I2MP"
Simulation type: assignment
Initial expression: "Km6E4P"/"I2MP"
Simulation type: assignment
Initial expression: "Km6SBP"/"I4BP"
Simulation type: assignment
Initial expression: "Km7OP"/"I2OP"
Simulation type: assignment
Initial expression: "Km7S7P"/"I2MP"
Simulation type: assignment
Initial expression: "Km7SBP"/"I4BP"
Simulation type: assignment
Initial expression: "Km8F6P"/"I2MP"
Simulation type: assignment
Initial expression: "Km8GAP"/"I2MP"
Simulation type: assignment
Initial expression: "Km8P5P"/"I2MP"
Simulation type: assignment
Initial expression: "Km8S7P"/"I2MP"
Simulation type: assignment
Initial expression: "Km9ADP"/"I3ADP"
Simulation type: assignment
Initial expression: "Km9ATP"/"I4ATP"
Simulation type: assignment
Initial expression: "Km9Ru5P"/"I2MP"
Simulation type: assignment
Initial expression: "Km9RuBP"/"I4BP"
Simulation type: assignment
Initial expression: "kf"*("Fmd"/"Fm"-1)/0.9
Simulation type: assignment
Initial expression: "Kx28OP"/"I2OPc"
Simulation type: assignment
Initial expression: "MALc"
Simulation type: assignment
Initial expression: "ERPS2"
Simulation type: assignment
Initial expression: "NADT"-"NADH"
Simulation type: assignment
Initial expression: "NADPT"-"NADPH"
Simulation type: assignment
Initial expression: "NADPTs"/"Vst"
Simulation type: assignment
Initial expression: "NADTs"/"Vcy"
Simulation type: assignment
Initial expression: "Oa"*"Patm"/"Rgas"/"TKalv"/1000*"Bo"
Simulation type: assignment
Initial value: 0.0026756840909091
Initial expression: OPT-2.0*(EPP+EPG+RuBP+OPOP+FBP+SBP+ATP)-(EP+PGA+T3P+HeP+E4P+S7P+P5P)-(ADP+ADPGlu) = 0.0026756840909091
Simulation type: assignment
Initial expression: "OPT"-2.0*("EPP"+"EPG"+"RuBP"+"OPOP"+"FBP"+"SBP"+"ATP")-("EP"+"EOP"+"PGA"+"T3P"+"HeP"+"E4P"+"S7P"+"P5P")-("ADP"+"ADPGlu")
Simulation type: assignment
Initial expression: "OPTc"-2.0*("FBPc"+"OPOPc"+"ATPc"+"UTPc")-("PGAc"+"T3Pc"+"HePc"+"SuCPc"+"ADPc"+"UDPc"+"UDPGluc")
Simulation type: assignment
Initial expression: "OPTs"/"Vst"
Simulation type: assignment
Initial expression: "OPTcs"/"Vcy"
Simulation type: assignment
Initial expression: "Oaw"
Simulation type: assignment
Initial expression: "OXAc"
Simulation type: assignment
Initial expression: "PS1T"-"P700_"
Simulation type: assignment
Initial expression: (-1*"par8"-1*sqrt("par8"*"par8"-4*"par7"*"par9"))/(2*"par7")
Simulation type: assignment
Initial expression: "Vme"*("kE48"-1)
Simulation type: assignment
Initial expression: ("kE48"*"FdT"*"Vst"+"FeST"*"Vme"-"PS1A_"*("kE48"-1))
Simulation type: assignment
Initial expression: -"FeST"*"PS1A_"
Simulation type: assignment
Initial expression: "kE41"-1
Simulation type: assignment
Initial expression: -("kE41"*("CytPCf_"+"PCfT")+"CytfT"-"CytPCf_")
Simulation type: assignment
Initial expression: "kE41"*"CytPCf_"*"PCfT"
Simulation type: assignment
Initial expression: "kE43"-1
Simulation type: assignment
Initial expression: -("kE43"*("PCpP700_"+"PS1T")+"PCpT"-"PCpP700_")
Simulation type: assignment
Initial expression: "kE43"*"PCpP700_"*"PS1T"
Simulation type: assignment
Initial expression: "PCfT"-"PCf_"
Simulation type: assignment
Initial expression: "PCT"-"PCpT"
Simulation type: assignment
Initial expression: (-1*"par5"-1*sqrt("par5"*"par5"-4*"par4"*"par6"))/(2*"par4")
Simulation type: assignment
Initial expression: "PCpT"-"PCp_"
Simulation type: assignment
Initial expression: "PCpP700T"-"PCpP700_"
Simulation type: assignment
Initial expression: "PCpT"+"PS1T"
Simulation type: assignment
Initial expression: "PCpP700_"-"P700_"
Simulation type: assignment
Initial expression: "PCTs"/"Vme"
Simulation type: assignment
Initial expression: "PQT"-"PQ_"
Simulation type: assignment
Initial expression: "PQTs"/"Vme"
Simulation type: assignment
Initial expression: "PS1Ts"/"Vme"
Simulation type: assignment
Initial expression: "PS2T"-"PS2A_"
Simulation type: assignment
Initial expression: ("A2"+"C2")
Simulation type: assignment
Initial expression: "PS2Ts"/"Vme"
Simulation type: assignment
Initial expression: "Chl1"/"PS1Ts"
Simulation type: assignment
Initial expression: "Chl2"/"PS2Ts"
Simulation type: assignment
Initial expression: ("HIft"/"kE50")*("HIft"/"kE50")/(1+("HIft"/"kE50")*("HIft"/"kE50"))
Simulation type: assignment
Initial expression: "Fd"/"FdT"
Simulation type: assignment
Initial expression: "Fd_"/"FdT"
Simulation type: assignment
Initial expression: "P5P"/(1+"kE17"+("kE17"/"kE18"))
Simulation type: assignment
Initial expression: "P5P"*"kE17"/(1+"kE17"+("kE17"/"kE18"))
Simulation type: assignment
Initial expression: 1+"I11"+"I21"+"I31"+"I41"
Simulation type: assignment
Initial expression: 1+"I110"+"I210"+"I310"+"I410"
Simulation type: assignment
Initial expression: 1+"I111"+"I211"+"I311"+"I411"
Simulation type: assignment
Initial expression: 1+"I112"+"I212"+"I312"+"I412"
Simulation type: assignment
Initial expression: 1+"I113"+"I213"+"I313"+"I413"
Simulation type: assignment
Initial expression: 1+"I114"+"I214"+"I314"+"I414"
Simulation type: assignment
Initial expression: 1+"I115"+"I215"+"I315"+"I415"
Simulation type: assignment
Initial expression: 1+"I116"+"I216"+"I316"+"I416"
Simulation type: assignment
Initial expression: 1+"I117"+"I217"+"I317"+"I417"
Simulation type: assignment
Initial expression: 1+"I118"+"I218"+"I318"+"I418"
Simulation type: assignment
Initial expression: 1+"I119"+"I219"+"I319"+"I419"
Simulation type: assignment
Initial expression: 1+"I12"+"I22"+"I32"+"I42"
Simulation type: assignment
Initial expression: 1+"I120"+"I220"+"I320"+"I420"
Simulation type: assignment
Initial expression: 1+"I121"+"I221"+"I321"+"I421"
Simulation type: assignment
Initial expression: 1+"I122"+"I222"+"I322"+"I422"
Simulation type: assignment
Initial expression: 1+"I123"+"I223"+"I323"+"I423"
Simulation type: assignment
Initial expression: 1+"I124"+"I224"+"I324"+"I424"
Simulation type: assignment
Initial expression: 1+"I125"+"I225"+"I325"+"I425"
Simulation type: assignment
Initial expression: 1+"I126"+"I226"+"I326"+"I426"
Simulation type: assignment
Initial expression: 1+"I127"+"I227"+"I327"+"I427"
Simulation type: assignment
Initial expression: 1+"I13"+"I23"+"I33"+"I43"
Simulation type: assignment
Initial expression: 1+"I14"+"I24"+"I34"+"I44"
Simulation type: assignment
Initial expression: 1+"I15"+"I25"+"I35"+"I45"
Simulation type: assignment
Initial expression: 1+"I16"+"I26"+"I36"+"I46"
Simulation type: assignment
Initial expression: 1+"I17"+"I27"+"I37"+"I47"
Simulation type: assignment
Initial expression: 1+"I18"+"I28"+"I38"+"I48"
Simulation type: assignment
Initial expression: 1+"I19"+"I29"+"I39"+"I49"
Simulation type: assignment
Initial expression: (0.33*("PCf_"+"PCp_")+"P700_"+0.2*"Fd_")/(0.33*"PCT"+"PS1T")
Simulation type: assignment
Initial expression: (0.11*("PCf_"+"PCp_")+0.077*"P700_")/(0.11*"PCT"+0.077*"PS1T")
Simulation type: assignment
Initial expression: "Tleaf"+273
Simulation type: assignment
Initial expression: "TRfT"-"TRf_"
Simulation type: assignment
Initial expression: "TRmT"-"TRm_"
Simulation type: assignment
Initial expression: "UDTc"-"UTPc"
Simulation type: assignment
Initial expression: "UDTcs"/"Vcy"
Simulation type: assignment
Initial expression: "ATPc"/"ADTc"*"UDTc"
Simulation type: assignment
Initial expression: "ACTf"*"Vm1"*("PGA"*"ATP"-"GAP"*"ADP"*"OP"/("kE1"*"HIrs"*"NADPH"/"NADP"))/"Km1PGAs"/"Km1ATPs"/"DenPGA"
Simulation type: assignment
Initial expression: "Vm10"
Simulation type: assignment
Initial expression: "Vm12"*("ADP"*"OPATP"-"ATP"/"kE12d")/"Km12ADPs"/"Km12OPs"/"Den12"
Simulation type: assignment
Initial expression: "Vm141"*("Fd_"*"NADP"-"NADPH"*"Fd"/"kE141")/"Km141Fd_"/"Km141NADP"/(1+"Fd_"/"Km141Fd_"+"NADP"/"Km141NADP"+"NADPH"/"Km141NADPH"+"Fd"/"Km141Fd"+"Fd_"/"Km141Fd"*"NADP"/"Km141NADP"+"NADPH"/"Km141NADPH"*"Fd"/"Km141Fd")
Simulation type: assignment
Initial expression: "Vm142"*("FeS_"*"CytF"-"CytF_"*"FeS"/"kE142")/"Km142Fd_"/"Km142Cytf"/(1+"Fd_"/"Km142Fd_"+"CytF"/"Km142Cytf"+"CytF_"/"Km142Cytf_"+"Fd"/"Km142Fd"+"Fd_"/"Km142Fd_"*"CytF"/"Km142Cytf"+"CytF_"/"Km142Cytf_"*"Fd"/"Km142Fd")
Simulation type: assignment
Initial expression: "Vm146"*"Owc"/("Km146Owc"+"Owc")*"CytF_"/"CytfT"
Simulation type: assignment
Initial expression: "Vm19a"*("ATP"*"G1P"-"ADPGlu"*"OPOP"/"kE19")/"Km19ATPs"/"Km19G1Ps"/(1+"ATP"/"Km19ATPs"+"G1P"/"Km19G1Ps"+"ATP"*"G1P"/"Km19ATPs"/"Km19G1Ps"+"ADPGlu"/"Km19ADPGlus"+"OPOP"/"Km19OPOPs"+"ADPGlu"*"OPOP"/"Km19ADPGlus"/"Km19OPOPs")
Simulation type: assignment
Initial expression: "Vm20"*("ADPGlu"-"ADP"/"kE20")/"Km20ADPGlus"/(1+"ADPGlu"/"Km20ADPGlus"+"ADP"/"Km20ADPs")
Simulation type: assignment
Initial expression: "Vm23"*("GAPc"*"DHAPc"-"FBPc"/"kE23")/"Km23GAPc"/"Km23DHAPc"/(1+"GAPc"/"Km23GAPc"+"DHAPc"/"Km23DHAPc"+"FBPc"/"Km23FBPc"+"GAPc"*"DHAPc"/"Km23GAPc"/"Km23DHAPc")
Simulation type: assignment
Initial expression: "Vm24"*"FBPc"*("FBPc"-"F6Pc"*"OPc"/"kE24")/("Km24FBPc"*"Km24FBPc")/(1+("FBPc"/"Km24FBPc")*("FBPc"/"Km24FBPc")+"F6Pc"/"Km24F6Pc"+"F6Pc"*"OPc"/"Km24F6Pc"/"Km24OPc"+"OPc"/"Km24OPc")
Simulation type: assignment
Initial expression: "Vm27"*("UTPc"*"G1Pc"-"UDPGluc"*"OPOPc"/"kE27")/"Km27UTPc"/"Km27G1Pc"/(1+"UTPc"/"Km27UTPc"+"G1Pc"/"Km27G1Pc"+"UTPc"*"G1Pc"/"Km27UTPc"/"Km27G1Pc"+"UDPGluc"/"Km27UDPGluc"+"OPOPc"/"Km27OPOPc"+"UDPGluc"*"OPOPc"/"Km27UDPGluc"/"Km27OPOPc")
Simulation type: assignment
Initial expression: "Vm28"*("F6Pc")*("F6Pc"*"UDPGluc"-"UDPc"*"SuCPc"*"HIrc"/"kE28")/("Km28F6Pc"*"Km28F6Pc")/"Km28UDPGluc"/"Den"
Simulation type: assignment
Initial expression: "Vm29"*("SuCPc"-"SuCc"*"OPc"/"kE29")/"Km29SUCPc"/(1+"SuCPc"/"Km29SUCPc"+"SuCc"/"Km29SUCc"+"SuCc"*"OPc"/"Km29SUCc"/"Km29OPc")
Simulation type: assignment
Initial expression: "Vm3"*("GAP"*"DHAP"-"FBP"/"kE3")/"Km3GAPs"/"Km3DHAPs"/"DenGAP"
Simulation type: assignment
Initial expression: "Vm31"*"F6Pc"/"Km31F6P"*(1+("OPc"/"Km31OP"))/(1+(("T3Pc"+"PGAc")/"Ki31T3P"))
Simulation type: assignment
Initial expression: "Vm32"*"F26BPc"/"Km32F26BP"*(1+(("T3Pc"+"PGAc")/"Km32T3P"))/(1+("OPc"/"Ki32OP")+"HePc"/"Ki32HeP")
Simulation type: assignment
Initial expression: "ACTf"*"Vm4"*("FBP"-"F6P"*"OP"/"kE4")/"Km4FBPs"/"DenFBP"
Simulation type: assignment
Initial expression: "RC40"*("PCf_"-"PCp_")
Simulation type: assignment
Initial expression: "RC40"*(("PCf_"-"PCp_")-("PCp"-"PCf"))
Simulation type: assignment
Initial expression: "Vm42"*("PQ_"*"CytF"-"CytF_"*"PQ"/"kE42d")/"Km42PQ_"/"CytfT"/(1+"PQ_"/"Km42PQ_")
Simulation type: assignment
Initial expression: "RC44"*("HIft"-"HIfs")
Simulation type: assignment
Initial expression: "RC45"*("PS2A_"*"PQ"-"PS2A"*"PQ_"/"kE45")
Simulation type: assignment
Initial expression: "Vm46"*("NADPH"*"PQ"-"NADP"*"PQ_"/"kE46")/"Km46NADPH"/"Km46PQ"/(1+"NADPH"/"Km46NADPH"+"PQ"/"Km46PQ"+"NADP"/"Km46NADP"+"PQ_"/"Km46PQ_"+"NADPH"/"Km46NADPH"*"PQ"/"Km46PQ"+"NADP"/"Km46NADP"*"NADPH"/"Km46NADPH")
Simulation type: assignment
Initial expression: "RC49"*"Fd_"*"Owc"/0.000267
Simulation type: assignment
Initial expression: "Vm_5"*("F6P"*"GAP"*"kE5"-"E4P"*"Xu5P")/"Km8P5Ps"/"Km5P5Ps"/"Den58"
Simulation type: assignment
Initial expression: "Vm6"*("E4P"*"DHAP"-"SBP"/"kE6")/"Km6E4Ps"/"Km6DHAPs"/"DenE4P"
Simulation type: assignment
Initial expression: "Vm60"*"ATP"/("Km60ATP"+"ATP")
Simulation type: assignment
Initial expression: "Vm61"*("PGAc"-"P2GAc"/"kE61")/"Km61P3GA"/(1+"PGAc"/"Km61P3GA"+"P2GAc"/"Km61P2GA")
Simulation type: assignment
Initial expression: "Vm62"*("P2GAc"-"PEPc"/"kE62")/"Km62P2GA"/(1+"P2GAc"/"Km62P2GA"+"PEPc"/"Km62PEP")
Simulation type: assignment
Initial expression: "Vm63"*("PEPc"*"Cc"-"OXAc"/"kE63")/"Km63PEP"/"Km63CO2"/(1+"PEPc"/"Km63PEP"+"Cc"/"Km63CO2"+"OXAc"/"Km63OXA"+"PEPc"/"Km63PEP"*"Cc"/"Km63CO2")
Simulation type: assignment
Initial expression: "ACTm"*"Vm64"*("NADPH"*"OXA"-"NADP"*"MAL"/"kE64")/"DenMAL"
Simulation type: assignment
Initial expression: "Vm65"*"Fd_"*"PYRc"/"Km65Fd_"/"Km65PYR"/(1+"Fd_"/"Km65Fd_"+"PYRc"/"Km65PYR"+"Fd_"/"Km65Fd_"*"PYRc"/"Km65PYR")
Simulation type: assignment
Initial expression: "Vm66"*("PEPc"-"PYRc"/"kE66")/"Km66PEP"/(1+"PEPc"/"Km66PEP"+"PYRc"/"Km66PYR")
Simulation type: assignment
Initial expression: "ACTf"*"Vm7"*("SBP"-"S7P"*"OP"/"kE7")/"Km7SBPs"/(1+"SBP"/"Km7SBPs"+"S7P"/"Km7S7Ps"+"OP"/"Km7OPs"+"S7P"*"OP"/"Km7S7Ps"/"Km7OPs")
Simulation type: assignment
Initial expression: "Vm_8"*("S7P"*"GAP"*"kE8"-"Xu5P"*"Ri5P")/"Km8P5Ps"/"Km5P5Ps"/"Den58"
Simulation type: assignment
Initial expression: "ACTf"*"Vm9"*("Ru5P"*"ATP"-"RuBP"*"ADP"/"kE9")/"Km9Ru5Ps"/"Km9ATPs"/(1+"Ru5P"/"Km9Ru5Ps"+"ATP"/"Km9ATPs"+"RuBP"/"Km9RuBPs"+"ADP"/"Km9ADPs"+"Ru5P"*"ATP"/"Km9Ru5Ps"/"Km9ATPs"+"RuBP"*"ADP"/"Km9RuBPs"/"Km9ADPs")
Simulation type: assignment
Initial expression: "k2"*"Cc"*"ER"
Simulation type: assignment
Initial expression: "Ccy"*"Vme"
Simulation type: assignment
Initial expression: "Clu"*"Vme"
Simulation type: assignment
Initial expression: "Vms0"/"Vst"
Simulation type: assignment
Initial expression: "Vms1"/"Vst"
Simulation type: assignment
Initial expression: "Vms10"/"Vst"
Simulation type: assignment
Initial expression: "Vms11"/"Vst"
Simulation type: assignment
Initial expression: "Vms12"/"Vst"
Simulation type: assignment
Initial expression: "Vms141"/"Vst"
Simulation type: assignment
Initial expression: "Vms142"/"Vst"
Simulation type: assignment
Initial expression: "Vms146"/"Vme"
Simulation type: assignment
Initial expression: "Vms19"/"Vst"
Simulation type: assignment
Initial expression: "Vm19"*("PGA"/"OP")*("PGA"/"OP")
Simulation type: assignment
Initial expression: "Vms20"/"Vcy"
Simulation type: assignment
Initial expression: "Vms21"/"Vcy"
Simulation type: assignment
Initial expression: "Vms23"/"Vcy"
Simulation type: assignment
Initial expression: "Vms24"/"Vcy"
Simulation type: assignment
Initial expression: "Vms27"/"Vcy"
Simulation type: assignment
Initial expression: "Vms28"/"Vcy"
Simulation type: assignment
Initial expression: "Vms29"/"Vcy"
Simulation type: assignment
Initial expression: "Vms3"/"Vst"
Simulation type: assignment
Initial expression: "Vms31"/"Vcy"
Simulation type: assignment
Initial expression: "Vms32"/"Vcy"
Simulation type: assignment
Initial expression: "Vms4"/"Vst"
Simulation type: assignment
Initial expression: "Vms42"/"Vme"
Simulation type: assignment
Initial expression: "Vms46"/"Vst"
Simulation type: assignment
Initial expression: "Vms6"/"Vst"
Simulation type: assignment
Initial expression: "Vms60"/"Vst"
Simulation type: assignment
Initial expression: "Vms61"/"Vcy"
Simulation type: assignment
Initial expression: "Vms62"/"Vcy"
Simulation type: assignment
Initial expression: "Vms63"/"Vcy"
Simulation type: assignment
Initial expression: "Vms64"/"Vst"
Simulation type: assignment
Initial expression: "Vms65"/"Vcy"
Simulation type: assignment
Initial expression: "Vms66"/"Vcy"
Simulation type: assignment
Initial expression: "Vms7"/"Vst"
Simulation type: assignment
Initial expression: "Vms9"/"Vst"
Simulation type: assignment
Initial expression: "Cvme"*"Chl"
Simulation type: assignment
Initial expression: "Vms_5"/"Vst"
Simulation type: assignment
Initial expression: "Vms_8"/"Vst"
Simulation type: assignment
Initial expression: "k6"*"Owc"*"ER"
Simulation type: assignment
Initial expression: "AI"*"OPc"/"Km11OPc"-"AII"*"OP"/"Km11OPs"
Simulation type: assignment
Initial expression: "PGA"*"AII"/"Km11PGAs"-"PGAc"*"AI"/"Km11PGAc"
Simulation type: assignment
Initial expression: "Cst"*"Vme"
Simulation type: assignment
Initial expression: "T3P"*"AII"/"Km11T3Ps"-"T3Pc"*"AI"/"Km11T3Pc"
Simulation type: assignment
Initial expression: "P5P"*"kE17"/"kE18"/(1+"kE17"+("kE17"/"kE18"))
Simulation type: assignment
Name Value
ADPGlu 0.000006295
ATP 0.0004245
CytPCf_ 0.000148
E4P 0.00004173
ENf_ 0.0009053
ENm_ 0.0008658
EOP 0.0002966
EP 0.0007045
EPG 0.0003206
EPP 0.0002711
ER 0.001201
F26BPc 0.00001121
FBP 0.0001239
FBPc 0.0006256
HeP 0.002901
HePc 0.003532
Hlt 0.01034
NADPH 0.0002435
Nq 0.9552
OPD
OXAc 0.0001544
P2GAc 0.0003424
P5P 0.0002352
PCpP700_ 0.0002193
PCpT 0.0008107
PEPc 0.0001701
PGA 0.002463
PGAc 0.002267
PQ_ 0.006058
PS1A_ 0.000007582
PYRc 0.0009215
RuBP 0.007723
S7P 0.0002698
SBP 0.0000655
SuCPc 0.00004772
T3P 0.001109
T3Pc 0.001723
TRf_ 0.0008133
TRm_ 0.0008133
UDPGluc 0.0007056

Constant quantities

Name Value
Achl 36200
ADTcs 0.00002
ADTs 0.00001
Arev 0
ATPc 0.0009652
a_ 2.3025851
BFHt 0.003
BF_t 0.04
Ca 0.00034
Cchl1 0.5
Cchl2 0.47
Ccy 8
Chl 0.00055
Clu 1
Cst 8
Cvme 4
CytfTs 0.0000015
ECytf 0.27
Eenf -0.32
Eenm -0.33
EFd -0.38
EFeS -0.4
ENAD -0.34
ENADP -0.34
ENfT 0.001
ENmT 0.001
EP700 0.365
EPC 0.295
EPQ 0
EQa -0.05
Etrf -0.34
Etrm -0.34
e_ 1.6022e-19
F0 0.16
FarRed 0
FdTs 0.000015
Fm 0.25
Fmd 1
Fmdi 0.8
G0 -8
G1 3
G10 -5
G12 7.3
G13 -1.8
G14 -0.42
G15 0.4
G16 1.7
G17 0.64
G18 -0.13
G19 1.6
G20 -8
G21 1.8
G23 -5.5
G24 -4
G25 0.4
G26 1.7
G27 0.71
G28 -0.29
G29 -3.3
G3 -5.5
G30 -3
G4 -4
G5 1.4
G6 -5.5
G61 1.1
G62 0.4
G63 -7.63
G64 -5
G66 -1
G7 -4
G8 0.1
G9 -5.2
HER 2
HPR 4
j2r 0
k1 50000
Ka19PGA 0.012
kA4 3
kA7 3
kA9 5
KBt 0.000001
kcat 3
Ki19OP 0.003
Ki24F26BP 0.000001
Ki28OP 0.0015
Ki31T3P 0.0015
Ki32HeP 0.0001
Ki32OP 0.001
Km024FBP 0.00002
Km028F6P 0.00026
Km0CO2 0.00001
Km10ADP 0.001
Km10ATP 0.0001
Km10F6P 0.0003
Km10FBP 0.001
Km11OP 0.00009
Km11PGA 0.00009
Km11T3P 0.00009
Km12ADP 0.0003
Km12ATP 0.000001447
Km12OP 0.0003
Km141Fd 0.001
Km141Fd_ 0.0001
Km141NADP 0.001
Km141NADPH 0.0005
Km142Cytf 0.001
Km142Cytf_ 0.001
Km142Fd 0.001
Km142Fd_ 0.0002
Km146Owc 0.000003
Km19ADPGlu 0.0005
Km19ATP 0.0001
Km19G1P 0.001
Km19OPOP 0.0008
Km1ADP 0.0005
Km1ATP 0.0003
Km1GAP 0.00026
Km1OP 0.0026
Km1PGA 0.001
Km20ADP 0.0006
Km20ADPGlu 0.0002
Km21ADP 0.0005
Km21ATP 0.0003
Km21GAP 0.00026
Km21OP 0.0026
Km21PGA 0.001
Km23DHAP 0.00035
Km23FBP 0.000019
Km23GAP 0.00026
Km24F6P 0.000061
Km24OP 0.0017
Km27G1P 0.00003
Km27OPOP 0.00003
Km27UDPGlu 0.00013
Km27UTP 0.0002
Km28SUCP 0.00035
Km28UDP 0.00058
Km28UDPGlu 0.0001
Km29OP 0.002
Km29SUC 0.01
Km29SUCP 0.00005
Km31F6P 0.001
Km31OP 0.001
Km32F26BP 0.000000001
Km32T3P 0.002
Km3DHAP 0.00035
Km3FBP 0.000019
Km3GAP 0.00026
Km42Cytf 0.0001
Km42Cytf_ 0.0005
Km42PQ 0.002
Km42PQ_ 0.001
km45NADP_del 0.000001
Km46NADP 0.000001
Km46NADPH 0.000001
Km46PQ 0.000001
Km46PQ_ 0.000001
Km4F6P 0.000061
Km4FBP 0.000031
Km4OP 0.0017
Km5GAP 0.00026
Km5P5P 0.00059
Km60ATP 0.000005
Km61P2GA 0.0001
Km61P3GA 0.001
Km62P2GA 0.0003
Km62PEP 0.0001
Km63CO2 0.000002
Km63OXA 0.0005
Km63PEP 0.0001
Km64MAL 0.001
Km64NADP 0.001
Km64NADPH 0.00015
Km64OXA 0.00005
Km65Fd_ 0.003
Km65PYR 0.00001
Km66PEP 0.0001
Km66PYR 0.0001
Km6DHAP 0.00035
Km6E4P 0.00017
Km6SBP 0.000019
Km7OP 0.0064
Km7S7P 0.000015
Km7SBP 0.000012
Km8F6P 0.00052
Km8GAP 0.000087
Km8P5P 0.00011
Km8S7P 0.00017
Km9ADP 0.000086
Km9ATP 0.0005
Km9Ru5P 0.000035
Km9RuBP 0.000094
Ksp 99
Kx28OP 0.0084
k_ 1.3807e-23
k_1 0.9
k_2 0
k_4 0
k_5 70000
k_6 0
k_7 0
Labs 0.87
MALc 0.0005
n2r 700
Na 6.022e23
NADH 0.0001
NADPTs 0.00002
NADTs 0.00002
Oa 0.21
OPOP 0.000001
OPOPc 0.00004
OPTcs 0.0003
OPTs 0.0005
Patm 96440
PCTs 0.000003567
PFD 0.002276
pHc 7.8
pHs 8.05
pK1ADPGlu 3.93
pK1AMP 3.74
pK1PGA 1.42
pK2ADP 3.93
pK2ADPGlu 6.83
pK2AMP 6.45
pK2MP 6.65
pK2OP 6.78
pK2PGA 3.42
pK3ADP 6.83
pK3ATP 4.06
pK3BP 6.02
pK3OP 12.4
pK3OPOP 6.7
pK3PGA 7.1
pK42 5.2
pK4ATP 7.06
pK4BP 6.82
pK4OPOP 9.4
pK50 5.65
PQTs 0.000015
PS1Ts 0.00000155
PS2Ts 0.00000201
RC40 1000
RC44 0
RC45 1000000000
RC49 0.01
RC50 0.1
RC52 1000
RC53 1000
RC54 1000
RC55 1000
Rgas 8.3144
Rgw 0.38
Rmd 0.015
Rmit 0
R_ 0.0019865
SLP 1
SuCc 0.05
Tau2 0.000615
Tleaf 22.5
TRfT 0.001
TRmT 0.001
UDTcs 0.00001
Vms0 0.000148
Vms1 0.0003
Vms10 0
Vms11 0.001
Vms12 0.0005
Vms141 0.0004
Vms142 0.001
Vms146 0
Vms19 0.00002
Vms20 0.00005
Vms21 0.000003613
Vms23 0.0001
Vms24 0.00002
Vms27 0.00007226
Vms28 0.0000013
Vms29 0.00001807
Vms3 0.0004
Vms31 0.000000001806
Vms32 0.000000000003613
Vms4 0.0002
Vms42 0.0003
Vms46 0
Vms6 0.0002
Vms60 0
Vms61 0.0001
Vms62 0.0001
Vms63 0.0000015
Vms64 0.000001
Vms65 0.00001
Vms66 0.0001
Vms7 0.0001
Vms9 0.01
Vms_5 0.003
Vms_8 0.001445
WDC 0.00000000000001

Assigned quantities

Name Value
A2
Ac
ACTf
ACTm
ADP
ADPc
ADT
ADTc
AI
AII
B2
Bc
Bo
C2
Caw
Cc
Chl1
Chl2
CytF
CytfT
CytF_
CytPCf
CytPCfT
D2
Den
Den11
Den12
Den58
DenAI
DenAII
DenE4P
DenFBP
DenGAP
DenMAL
DenPGA
DHAP
DHAPc
E0T
Ef
ENf
ENm
ERChl1
ERChl2
ERPS1
ERPS2
ETRPS1
F6P
F6Pc
Fd
FdT
Fd_
FeS
FeST
FeS_
Fl
Fl0
FlA
FlA_
Flm
G1P
G1Pc
G6P
G6Pc
GAP
GAPc
HIfs
HIft
HIrc
HIrs
I11
I110
I111
I112
I113
I114
I115
I116
I117
I118
I119
I12
I120
I121
I122
I123
I124
I125
I126
I127
I13
I14
I15
I16
I17
I18
I19
I21
I210
I211
I212
I213
I214
I215
I216
I217
I218
I219
I22
I220
I221
I222
I223
I224
I225
I226
I227
I23
I24
I25
I26
I27
I28
I29
I2ADPGlu
I2ADPGlu7
I2ADPGluc
I2AMP
I2AMP7
I2AMPc
I2MP
I2MP7
I2MPc
I2OP
I2OP7
I2OPc
I2PGA
I2PGAc
I31
I310
I311
I312
I313
I314
I315
I316
I317
I318
I319
I32
I320
I321
I322
I323
I324
I325
I326
I327
I33
I34
I35
I36
I37
I38
I39
I3ADP
I3ADP7
I3ADPc
I3PGA
I3PGA7
I3PGAc
I41
I410
I411
I412
I413
I414
I415
I416
I417
I418
I419
I42
I420
I421
I422
I423
I424
I425
I426
I427
I43
I44
I45
I46
I47
I48
I49
I4ATP
I4ATP7
I4ATPc
I4BP
I4BP7
I4BPc
I4OPOP
I4OPOP7
I4OPOPc
j2d
JFl
k2
k2d
k2r
k4
k5
k6
k7
kE0
kE1
kE10
kE12
kE12d
kE13
kE14
kE141
kE142
kE15
kE16
kE17
kE18
kE19
kE20
kE21
kE23
kE24
kE25
kE26
kE27
kE28
kE29
kE3
kE30
kE4
kE41
kE42
kE42d
kE43
kE45
kE46
kE48
kE5
kE50
kE51
kE52
kE53
kE54
kE55
kE6
kE61
kE62
kE63
kE64
kE66
kE7
kE8
kE9
kf
ki
Ki19OPs
Ki24F26BPc
Ki28OPc
Ki42
Km024FBPc
Km028F6Pc
Km10ADPs
Km10ATPs
Km10F6Ps
Km10FBPs
Km11OPc
Km11OPs
Km11PGAc
Km11PGAs
Km11T3Pc
Km11T3Ps
Km12ADPs
Km12ATPs
Km12ATPSs
Km12OPs
Km19ADPGlus
Km19ATPs
Km19G1Ps
Km19OPOPs
Km1ADPs
Km1ATPs
Km1GAPs
Km1OPs
Km1PGAs
Km20ADPGlus
Km20ADPs
Km21ADPc
Km21ATPc
Km21GAPc
Km21OPc
Km21PGAc
Km23DHAPc
Km23FBPc
Km23GAPc
Km24F6Pc
Km24FBPc
Km24OPc
Km27G1Pc
Km27OPOPc
Km27UDPGluc
Km27UTPc
Km28F6Pc
Km28SUCPc
Km28UDPc
Km28UDPGluc
Km29OPc
Km29SUCc
Km29SUCPc
Km3DHAPs
Km3FBPs
Km3GAPs
Km4F6Ps
Km4FBPs
Km4OPs
Km5GAPs
Km5P5Ps
Km6DHAPs
Km6E4Ps
Km6SBPs
Km7OPs
Km7S7Ps
Km7SBPs
Km8F6Ps
Km8GAPs
Km8P5Ps
Km8S7Ps
Km9ADPs
Km9ATPs
Km9Ru5Ps
Km9RuBPs
kN
Kx28OPc
MAL
n2d
NAD
NADP
NADPT
NADT
Oaw
OP 0.0026756840909091
OPATP
OPc
OPT
OPTc
Owc
OXA
P700
P700_
par10
par11
par12
par4
par5
par6
par7
par8
par9
PCf
PCfT
PCf_
PCp
PCpP700
PCpP700T
PCp_
PCT
PQ
PQT
PS1T
PS2A
PS2A_
PS2T
PSU1
PSU2
QH
RFd
RFd_
Ri5P
Ru5P
SUM1
SUM10
SUM11
SUM12
SUM13
SUM14
SUM15
SUM16
SUM17
SUM18
SUM19
SUM2
SUM20
SUM21
SUM22
SUM23
SUM24
SUM25
SUM26
SUM27
SUM3
SUM4
SUM5
SUM6
SUM7
SUM8
SUM9
T810
T950
TKalv
TRf
TRm
UDPc
UDTc
UTPc
V1
V10
V12
V141
V142
V146
V19
V20
V23
V24
V27
V28
V29
V3
V31
V32
V4
V40e
V40pc
V42
V44
V45
V46
V49
V5
V6
V60
V61
V62
V63
V64
V65
V66
V7
V8
V9
Vc
Vcy
Vlu
Vm0
Vm1
Vm10
Vm11
Vm12
Vm141
Vm142
Vm146
Vm19
Vm19a
Vm20
Vm21
Vm23
Vm24
Vm27
Vm28
Vm29
Vm3
Vm31
Vm32
Vm4
Vm42
Vm46
Vm6
Vm60
Vm61
Vm62
Vm63
Vm64
Vm65
Vm66
Vm7
Vm9
Vme
Vm_5
Vm_8
Vo
VOPin
VPGAout
Vst
VT3Pout
Xu5P
Name Value
Simulation end 1
Logscale 1
Scale y-axis 1000
Simulation start 1e-05
Number of steps 20
Label x-axis time [s]
Label y-axis rel. units scaled by 10^3

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